RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TMEM266Q2M3C6 531 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 ANO5Q75V66 913 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 BANK1Q8NDB2 785 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 ZNF689Q96CS4 500 aaPredicted RBP21.61■■□□□ 1.05
CLN3-260ENST00000637578 LMCD1Q9NZU5 365 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 GINS2Q9Y248 185 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 WNT7AO00755 349 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 RPS6KA5O75582 802 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 QARSP47897 775 aaKnown RBP21.61■■□□□ 1.05
CLN3-260ENST00000637578 FOSBP53539 338 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 TBC1D8BQ0IIM8 1120 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 EPHA7Q15375 998 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 LRRC71Q8N4P6 559 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 FBXO18Q8NFZ0 1043 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 C17orf80Q9BSJ5 609 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 ST3GAL5Q9UNP4 418 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 TMEM150BA6NC51 233 aa21.6■■□□□ 1.05
CLN3-260ENST00000637578 GPR182O15218 404 aa21.6■■□□□ 1.05
CLN3-260ENST00000637578 GTPBP6O43824 516 aaPredicted RBP21.6■■□□□ 1.05
CLN3-260ENST00000637578 BAG4O95429 457 aaKnown RBP21.6■■□□□ 1.05
CLN3-260ENST00000637578 P4HBP07237 508 aaKnown RBP21.6■■□□□ 1.05
CLN3-260ENST00000637578 LINC00271P0C7V0 271 aa21.6■■□□□ 1.05
CLN3-260ENST00000637578 CCDC85BQ15834 202 aaPredicted RBP21.6■■□□□ 1.05
CLN3-260ENST00000637578 ODR4Q5SWX8 454 aa21.6■■□□□ 1.05
CLN3-260ENST00000637578 PPM1EQ8WY54 764 aa21.6■■□□□ 1.05
CLN3-260ENST00000637578 C8orf76Q96K31 380 aa21.6■■□□□ 1.05
CLN3-260ENST00000637578 SAMD11Q96NU1 681 aa21.6■■□□□ 1.05
CLN3-260ENST00000637578 MAP7D2Q96T17 732 aa21.6■■□□□ 1.05
CLN3-260ENST00000637578 OSMRQ99650 979 aa21.6■■□□□ 1.05
CLN3-260ENST00000637578 WRAP73Q9P2S5 460 aaPredicted RBP21.6■■□□□ 1.05
CLN3-260ENST00000637578 SEPT9Q9UHD8 586 aaPredicted RBP21.6■■□□□ 1.05
CLN3-260ENST00000637578 PRRC2BQ5JSZ5 2229 aaKnown RBP21.59■■□□□ 1.05
CLN3-260ENST00000637578 LOXHD1Q8IVV2 1947 aa21.59■■□□□ 1.05
CLN3-260ENST00000637578 MGEA5O60502 916 aa21.59■■□□□ 1.05
CLN3-260ENST00000637578 DGKIO75912 1065 aa21.59■■□□□ 1.05
CLN3-260ENST00000637578 NLRP11P59045 1033 aaKnown RBP21.59■■□□□ 1.05
CLN3-260ENST00000637578 NFX1Q12986 1120 aaKnown RBP21.59■■□□□ 1.05
CLN3-260ENST00000637578 SAFBQ15424 915 aaKnown RBP eCLIP21.59■■□□□ 1.05
CLN3-260ENST00000637578 FAM228AQ86W67 206 aa21.59■■□□□ 1.05
CLN3-260ENST00000637578 SNX21Q969T3 373 aa21.59■■□□□ 1.05
CLN3-260ENST00000637578 MTMR9Q96QG7 549 aa21.59■■□□□ 1.05
CLN3-260ENST00000637578 MTUS1Q9ULD2 1270 aa21.59■■□□□ 1.05
CLN3-260ENST00000637578 AKT3Q9Y243 479 aa21.59■■□□□ 1.05
CLN3-260ENST00000637578 DDX11L8A8MPP1 907 aa21.58■■□□□ 1.05
CLN3-260ENST00000637578 DKC1O60832 514 aaKnown RBP eCLIP21.58■■□□□ 1.05
CLN3-260ENST00000637578 MAFO75444 373 aaPredicted RBP21.58■■□□□ 1.05
CLN3-260ENST00000637578 GUCY1B3Q02153 619 aa21.58■■□□□ 1.05
CLN3-260ENST00000637578 MTERF2Q49AM1 385 aa21.58■■□□□ 1.05
CLN3-260ENST00000637578 EPC2Q52LR7 807 aa21.58■■□□□ 1.05
CLN3-260ENST00000637578 NPAS4Q8IUM7 802 aa21.58■■□□□ 1.05
CLN3-260ENST00000637578 C4orf19Q8IY42 314 aa21.58■■□□□ 1.05
CLN3-260ENST00000637578 GDPD5Q8WTR4 605 aa21.58■■□□□ 1.05
CLN3-260ENST00000637578 PPP1R16BQ96T49 567 aa21.58■■□□□ 1.05
CLN3-260ENST00000637578 FOXP1Q9H334 677 aaPredicted RBP21.58■■□□□ 1.05
CLN3-260ENST00000637578 PRDM6Q9NQX0 595 aa21.58■■□□□ 1.05
CLN3-260ENST00000637578 RGS18Q9NS28 235 aa21.58■■□□□ 1.05
CLN3-260ENST00000637578 MARCH6O60337 910 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 GPC3P51654 580 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 CDC42EP1Q00587 391 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 DRP2Q13474 957 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 CALCRLQ16602 461 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 FBXO22Q8NEZ5 403 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 CLP1Q92989 425 aaKnown RBP21.57■■□□□ 1.04
CLN3-260ENST00000637578 PCDHA12Q9UN75 941 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 PPME1Q9Y570 386 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 ADGRA3Q8IWK6 1321 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 NEMFO60524 1076 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 EIF4BP23588 611 aaKnown RBP21.57■■□□□ 1.04
CLN3-260ENST00000637578 SARSP49591 514 aaKnown RBP21.57■■□□□ 1.04
CLN3-260ENST00000637578 DSC3Q14574 896 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 TMEM192Q8IY95 271 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 FIBCD1Q8N539 461 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 HSD17B14Q9BPX1 270 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 SH2D3AQ9BRG2 576 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 CYP26B1Q9NR63 512 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 C1orf112Q9NSG2 853 aa21.57■■□□□ 1.04
CLN3-260ENST00000637578 REV3LO60673 3130 aa21.56■■□□□ 1.04
CLN3-260ENST00000637578 C9IYK1 514 aa21.56■■□□□ 1.04
CLN3-260ENST00000637578 C5orf67F2Z3F1 127 aa21.56■■□□□ 1.04
CLN3-260ENST00000637578 K7ELQ4 463 aaPredicted RBP21.56■■□□□ 1.04
CLN3-260ENST00000637578 STAG3L1P0CL83 205 aa21.56■■□□□ 1.04
CLN3-260ENST00000637578 FAM189BP81408 668 aa21.56■■□□□ 1.04
CLN3-260ENST00000637578 NCAPH2Q6IBW4 605 aa21.56■■□□□ 1.04
CLN3-260ENST00000637578 SLC24A5Q71RS6 500 aa21.56■■□□□ 1.04
CLN3-260ENST00000637578 ADAM2Q99965 735 aa21.56■■□□□ 1.04
CLN3-260ENST00000637578 LXNQ9BS40 222 aa21.56■■□□□ 1.04
CLN3-260ENST00000637578 TTC12Q9H892 705 aaPredicted RBP21.56■■□□□ 1.04
CLN3-260ENST00000637578 RGL1Q9NZL6 768 aa21.56■■□□□ 1.04
CLN3-260ENST00000637578 H3BNC9 293 aa21.55■■□□□ 1.04
CLN3-260ENST00000637578 SLITRK3O94933 977 aa21.55■■□□□ 1.04
CLN3-260ENST00000637578 DARSP14868 501 aaKnown RBP21.55■■□□□ 1.04
CLN3-260ENST00000637578 CUL4AQ13619 759 aa21.55■■□□□ 1.04
CLN3-260ENST00000637578 PLA2G4FQ68DD2 849 aa21.55■■□□□ 1.04
CLN3-260ENST00000637578 HSCBQ8IWL3 235 aa21.55■■□□□ 1.04
CLN3-260ENST00000637578 ZNF579Q8NAF0 562 aaKnown RBP21.55■■□□□ 1.04
CLN3-260ENST00000637578 FAM184AQ8NB25 1140 aa21.55■■□□□ 1.04
CLN3-260ENST00000637578 ATXN2LQ8WWM7 1075 aaKnown RBP21.55■■□□□ 1.04
CLN3-260ENST00000637578 DYDC2Q96IM9 177 aa21.55■■□□□ 1.04
CLN3-260ENST00000637578 JPH2Q9BR39 696 aaPredicted RBP21.55■■□□□ 1.04
CLN3-260ENST00000637578 ZSWIM4Q9H7M6 989 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms