RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 PIK3AP1Q6ZUJ8 805 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 ERMP1Q7Z2K6 904 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 RPAINQ86UA6 219 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 FBXL6Q8N531 539 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 SP7Q8TDD2 431 aaPredicted RBP13.12□□□□□ -0.31
CLN3-257ENST00000637110 ATP8B4Q8TF62 1192 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 GJA10Q969M2 543 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 IFIH1Q9BYX4 1025 aaKnown RBP13.12□□□□□ -0.31
CLN3-257ENST00000637110 DISC1Q9NRI5 854 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 DDX25Q9UHL0 483 aaKnown RBP13.12□□□□□ -0.31
CLN3-257ENST00000637110 GINS2Q9Y248 185 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 PCDHA2Q9Y5H9 948 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 RALGAPA2Q2PPJ7 1873 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 MYO7AQ13402 2215 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 KRT2P35908 639 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 JAK3P52333 1124 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 SMAD4Q13485 552 aaKnown RBP13.11□□□□□ -0.31
CLN3-257ENST00000637110 Q4G0T1 1027 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 MIER3Q7Z3K6 550 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 NEK8Q86SG6 692 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 BBXQ8WY36 941 aaPredicted RBP13.11□□□□□ -0.31
CLN3-257ENST00000637110 ATOH1Q92858 354 aaPredicted RBP13.11□□□□□ -0.31
CLN3-257ENST00000637110 APBB2Q92870 758 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 SLC5A5Q92911 643 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 LENG9Q96B70 501 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 IL17RAQ96F46 866 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 YME1L1Q96TA2 773 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 RIT2Q99578 217 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 OSBPL7Q9BZF2 842 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 UPF2Q9HAU5 1272 aaKnown RBP13.11□□□□□ -0.31
CLN3-257ENST00000637110 LIMCH1Q9UPQ0 1083 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 TRPV2Q9Y5S1 764 aa13.11□□□□□ -0.31
CLN3-257ENST00000637110 M0R2N6 131 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 MBTPS2O43462 519 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 EDIL3O43854 480 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 CCNT1O60563 726 aaKnown RBP13.1□□□□□ -0.31
CLN3-257ENST00000637110 JAK2O60674 1132 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 SFNP31947 248 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 MGAT3Q09327 533 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 NPY5RQ15761 445 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 C8orf34Q49A92 452 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 CCDC83Q8IWF9 413 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 TMEM192Q8IY95 271 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 NME8Q8N427 588 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 METTL13Q8N6R0 699 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 NSUN7Q8NE18 718 aaKnown RBP13.1□□□□□ -0.31
CLN3-257ENST00000637110 OXER1Q8TDS5 423 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 FAM167AQ96KS9 214 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 NAP1L4Q99733 375 aaKnown RBP13.1□□□□□ -0.31
CLN3-257ENST00000637110 UNC45AQ9H3U1 944 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 NRBP2Q9NSY0 501 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 FAM86C1Q9NVL1 165 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 CEP131Q9UPN4 1083 aa13.1□□□□□ -0.31
CLN3-257ENST00000637110 MAFBQ9Y5Q3 323 aaPredicted RBP13.1□□□□□ -0.31
CLN3-257ENST00000637110 COL1A2P08123 1366 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 COL4A6Q14031 1691 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 CYP3A7-CYP3A51PA0A087WV96 503 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 SMIM35A0A1B0GVV1 85 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 FDPSP14324 419 aaKnown RBP13.09□□□□□ -0.31
CLN3-257ENST00000637110 ATP4AP20648 1035 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 IBSPP21815 317 aaPredicted RBP13.09□□□□□ -0.31
CLN3-257ENST00000637110 CYP3A7P24462 503 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 LTBRP36941 435 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 LPIN1Q14693 890 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 CLUL1Q15846 466 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 CTC1Q2NKJ3 1217 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 FBXO47Q5MNV8 452 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 MOXD1Q6UVY6 613 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 TSHZ1Q6ZSZ6 1077 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 PPP1R16BQ96T49 567 aa13.09□□□□□ -0.31
CLN3-257ENST00000637110 CELF4Q9BZC1 486 aaKnown RBP13.09□□□□□ -0.31
CLN3-257ENST00000637110 MYH9P35579 1960 aaKnown RBP13.09□□□□□ -0.31
CLN3-257ENST00000637110 FAM186AA6NE01 2351 aa13.08□□□□□ -0.32
CLN3-257ENST00000637110 BAG4O95429 457 aaKnown RBP13.08□□□□□ -0.32
CLN3-257ENST00000637110 OATP04181 439 aa13.08□□□□□ -0.32
CLN3-257ENST00000637110 GCFC2P16383 781 aaKnown RBP13.08□□□□□ -0.32
CLN3-257ENST00000637110 CD52P31358 61 aa13.08□□□□□ -0.32
CLN3-257ENST00000637110 ZXDAP98168 799 aa13.08□□□□□ -0.32
CLN3-257ENST00000637110 NFX1Q12986 1120 aaKnown RBP13.08□□□□□ -0.32
CLN3-257ENST00000637110 PAK2Q13177 524 aa13.08□□□□□ -0.32
CLN3-257ENST00000637110 NR5A1Q13285 461 aa13.08□□□□□ -0.32
CLN3-257ENST00000637110 SAFBQ15424 915 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLN3-257ENST00000637110 FAM184AQ8NB25 1140 aa13.08□□□□□ -0.32
CLN3-257ENST00000637110 ZSCAN31Q96LW9 406 aaPredicted RBP13.08□□□□□ -0.32
CLN3-257ENST00000637110 LMAN2LQ9H0V9 348 aa13.08□□□□□ -0.32
CLN3-257ENST00000637110 SEPT9Q9UHD8 586 aaPredicted RBP13.08□□□□□ -0.32
CLN3-257ENST00000637110 CD207Q9UJ71 328 aa13.08□□□□□ -0.32
CLN3-257ENST00000637110 RIF1Q5UIP0 2472 aaKnown RBP13.08□□□□□ -0.32
CLN3-257ENST00000637110 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.07□□□□□ -0.32
CLN3-257ENST00000637110 MAGEB2O15479 319 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 SLC37A4O43826 429 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 PSMD10O75832 226 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 TMOD1P28289 359 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 NUBP1P53384 320 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 GUCY1B3Q02153 619 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 PRKCEQ02156 737 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 EFCAB12Q6NXP0 572 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 DIS3L2Q8IYB7 885 aaKnown RBP13.07□□□□□ -0.32
CLN3-257ENST00000637110 RDM1Q8NG50 284 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 TOP1MTQ969P6 601 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms