RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 GPR20Q99678 358 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 STRA6Q9BX79 667 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 VTA1Q9NP79 307 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.6■□□□□ 0.57
CLN3-252ENST00000636907 LARSQ9P2J5 1176 aaKnown RBP18.6■□□□□ 0.57
CLN3-252ENST00000636907 DIS3Q9Y2L1 958 aaKnown RBP18.6■□□□□ 0.57
CLN3-252ENST00000636907 MYH9P35579 1960 aaKnown RBP18.59■□□□□ 0.57
CLN3-252ENST00000636907 ZNF236Q9UL36 1845 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 SLC15A5A6NIM6 579 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 PES1O00541 588 aaKnown RBP18.59■□□□□ 0.57
CLN3-252ENST00000636907 CALUO43852 315 aaPredicted RBP18.59■□□□□ 0.57
CLN3-252ENST00000636907 PPP1R37O75864 691 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 ECM2O94769 699 aaPredicted RBP18.59■□□□□ 0.57
CLN3-252ENST00000636907 MAPTP10636 758 aaKnown RBP18.59■□□□□ 0.57
CLN3-252ENST00000636907 SFPQP23246 707 aaKnown RBP eCLIP18.59■□□□□ 0.57
CLN3-252ENST00000636907 CCZ1BP86790 482 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 CCZ1P86791 482 aaPredicted RBP18.59■□□□□ 0.57
CLN3-252ENST00000636907 GOLGA8FQ08AF8 430 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 GOLGA8DPQ0D2H9 430 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 ADAM9Q13443 819 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 HSDL1Q3SXM5 330 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 MTERF2Q49AM1 385 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 MIIPQ5JXC2 388 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 FAM160B1Q5W0V3 765 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 MAMDC4Q6UXC1 1216 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 STXBP4Q6ZWJ1 553 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 DHX37Q8IY37 1157 aaKnown RBP18.59■□□□□ 0.57
CLN3-252ENST00000636907 MAML3Q96JK9 1138 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 NOC4LQ9BVI4 516 aaKnown RBP18.59■□□□□ 0.57
CLN3-252ENST00000636907 KATNBL1Q9H079 304 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 PCDHB13Q9Y5F0 798 aa18.59■□□□□ 0.57
CLN3-252ENST00000636907 ITIH6Q6UXX5 1313 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 TMEM88BA6NKF7 163 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 K7ENM7 598 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 TGFB1I1O43294 461 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 DGAT1O75907 488 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 SNAI1O95863 264 aaPredicted RBP18.58■□□□□ 0.57
CLN3-252ENST00000636907 TPM2P07951 284 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 NR2F2P24468 414 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 STAT5BP51692 787 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 CEP135Q66GS9 1140 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 C17orf99Q6UX52 265 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 NPLOC4Q8TAT6 608 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 AFAP1L1Q8TED9 768 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 SPATA33Q96N06 139 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 IKZF4Q9H2S9 585 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 XPNPEP1Q9NQW7 623 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 PDLIM7Q9NR12 457 aa18.58■□□□□ 0.57
CLN3-252ENST00000636907 NOP56O00567 594 aaKnown RBP18.57■□□□□ 0.56
CLN3-252ENST00000636907 CETN3O15182 167 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 TLR2O60603 784 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 SREBF2Q12772 1141 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 ZIC5Q96T25 663 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 RBM47A0AV96 593 aaKnown RBP18.57■□□□□ 0.56
CLN3-252ENST00000636907 LGR5O75473 907 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 DNM2P50570 870 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 PEX3P56589 373 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 SOX10P56693 466 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 MAN2A1Q16706 1144 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 CCDC40Q4G0X9 1142 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 VWA3BQ502W6 1294 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 MORN1Q5T089 497 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 MCPH1Q8NEM0 835 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 KIFAP3Q92845 792 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 TINF2Q9BSI4 451 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 NIFKQ9BYG3 293 aaKnown RBP18.57■□□□□ 0.56
CLN3-252ENST00000636907 ATP6V0A4Q9HBG4 840 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 ZFYVE28Q9HCC9 887 aa18.57■□□□□ 0.56
CLN3-252ENST00000636907 A0A1W2PQC6 194 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 CLIC2O15247 247 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 ZNF500O60304 480 aaPredicted RBP18.56■□□□□ 0.56
CLN3-252ENST00000636907 GNA14O95837 355 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 NR3C1P04150 777 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 SKILP12757 684 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 NCKAP1LP55160 1127 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 MARSP56192 900 aaKnown RBP18.56■□□□□ 0.56
CLN3-252ENST00000636907 ARHGAP1Q07960 439 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 RBL2Q08999 1139 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 ALCAMQ13740 583 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 C17orf53Q8N3J3 647 aaPredicted RBP18.56■□□□□ 0.56
CLN3-252ENST00000636907 KIAA1524Q8TCG1 905 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 HHIPL1Q96JK4 782 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 AZI2Q9H6S1 392 aa18.56■□□□□ 0.56
CLN3-252ENST00000636907 ADCYAP1R1P41586 468 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 TM4SF4P48230 202 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 ADKP55263 362 aaKnown RBP18.55■□□□□ 0.56
CLN3-252ENST00000636907 TBC1D8BQ0IIM8 1120 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 CRHR2Q13324 411 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 EMC2Q15006 297 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 GJC2Q5T442 439 aaPredicted RBP18.55■□□□□ 0.56
CLN3-252ENST00000636907 PPFIBP1Q86W92 1011 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 TRIM50Q86XT4 487 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 TC2NQ8N9U0 490 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 BSNDQ8WZ55 320 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 CEP89Q96ST8 783 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 NDST4Q9H3R1 872 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 ST6GALNAC4Q9H4F1 302 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 NRBP2Q9NSY0 501 aa18.55■□□□□ 0.56
CLN3-252ENST00000636907 SLC16A4O15374 487 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 GYPCP04921 128 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms