RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 BACH1O14867 736 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 UBE4BO95155 1302 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 PON1P27169 355 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 RAPGEF1Q13905 1077 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 EXOC3L4Q17RC7 722 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 ASTE1Q2TB18 679 aaPredicted RBP17.15■□□□□ 0.34
CLN3-251ENST00000636853 PLA2G4FQ68DD2 849 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 DPY19L2P1Q6NXN4 242 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 HS2ST1Q7LGA3 356 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 FAM186BQ8IYM0 893 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 SYCP3Q8IZU3 236 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 NSUN6Q8TEA1 469 aaKnown RBP17.15■□□□□ 0.34
CLN3-251ENST00000636853 CCDC43Q96MW1 224 aaKnown RBP17.15■□□□□ 0.34
CLN3-251ENST00000636853 GBP3Q9H0R5 595 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 NUCKS1Q9H1E3 243 aaKnown RBP17.15■□□□□ 0.34
CLN3-251ENST00000636853 AGPAT3Q9NRZ7 376 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 HOXC10Q9NYD6 342 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 CYP39A1Q9NYL5 469 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 WDR90Q96KV7 1748 aa17.15■□□□□ 0.34
CLN3-251ENST00000636853 PPP1R37O75864 691 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 LYPLA2O95372 231 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 LCA5LO95447 670 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 PSMC2P35998 433 aaKnown RBP17.14■□□□□ 0.33
CLN3-251ENST00000636853 JAK3P52333 1124 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 NPEPPSP55786 919 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 KRT76Q01546 638 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 ENOX2Q16206 610 aaKnown RBP17.14■□□□□ 0.33
CLN3-251ENST00000636853 SLC9C1Q4G0N8 1177 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 RSRC2Q7L4I2 434 aaKnown RBP17.14■□□□□ 0.33
CLN3-251ENST00000636853 SRGAP1Q7Z6B7 1085 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 NLRX1Q86UT6 975 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 C4orf19Q8IY42 314 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 STRA6Q9BX79 667 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 ACAD9Q9H845 621 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 HDAC6Q9UBN7 1215 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 TELO2Q9Y4R8 837 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 SPDYE4A6NLX3 237 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 ATP2A1O14983 1001 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 RGS20O76081 388 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 ATP1A1P05023 1023 aaKnown RBP17.14■□□□□ 0.33
CLN3-251ENST00000636853 SERPING1P05155 500 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 H2AFXP16104 143 aaPredicted RBP17.14■□□□□ 0.33
CLN3-251ENST00000636853 PSMC5P62195 406 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 AMPD2Q01433 879 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 MAPK8IP2Q13387 824 aaPredicted RBP17.14■□□□□ 0.33
CLN3-251ENST00000636853 NFIL3Q16649 462 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 TREML2Q5T2D2 321 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 FAM133AQ8N9E0 248 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 SYN2Q92777 582 aaPredicted RBP17.14■□□□□ 0.33
CLN3-251ENST00000636853 GPRASP2Q96D09 838 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 SPON1Q9HCB6 807 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 GPRC5CQ9NQ84 441 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 RNF181Q9P0P0 153 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 LARSQ9P2J5 1176 aaKnown RBP17.14■□□□□ 0.33
CLN3-251ENST00000636853 MYO6Q9UM54 1294 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 DOCK5Q9H7D0 1870 aa17.14■□□□□ 0.33
CLN3-251ENST00000636853 SSU72P8A0A1W2PR75 194 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 SORBS3O60504 671 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 SFNP31947 248 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 CHMP4BP1P59074 171 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 XRRA1Q6P2D8 792 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 GOLGA1Q92805 767 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 INPP4AQ96PE3 977 aaPredicted RBP17.13■□□□□ 0.33
CLN3-251ENST00000636853 ADARB2Q9NS39 739 aaKnown RBP17.13■□□□□ 0.33
CLN3-251ENST00000636853 UCHL3P15374 230 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 MAGEA1P43355 309 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 SP4Q02446 784 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 TUBB2AQ13885 445 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 XKR9Q5GH70 373 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 SH3D19Q5HYK7 790 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 KLHDC7AQ5VTJ3 777 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 EHBP1Q8NDI1 1231 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 TUBB2BQ9BVA1 445 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 MOV10L1Q9BXT6 1211 aaKnown RBP17.13■□□□□ 0.33
CLN3-251ENST00000636853 TSGA10Q9BZW7 698 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 MLXIPQ9HAP2 919 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 DMAC2Q9NW81 257 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 FHOD1Q9Y613 1164 aa17.13■□□□□ 0.33
CLN3-251ENST00000636853 TISP43B9A030 160 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 PLS3P13797 630 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 KCNA2P16389 499 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 ASIC2Q16515 512 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 GBP6Q6ZN66 633 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 SULF1Q8IWU6 871 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 CEP112Q8N8E3 955 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 RDH13Q8NBN7 331 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 SECISBP2LQ93073 1101 aaKnown RBP17.12■□□□□ 0.33
CLN3-251ENST00000636853 DCPSQ96C86 337 aaKnown RBP17.12■□□□□ 0.33
CLN3-251ENST00000636853 PLCB1Q9NQ66 1216 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 GCNT4Q9P109 453 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 FRMD4BQ9Y2L6 1034 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 WDR81Q562E7 1941 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 PPP1R12BO60237 982 aaPredicted RBP17.12■□□□□ 0.33
CLN3-251ENST00000636853 ZNF746Q6NUN9 644 aaPredicted RBP17.12■□□□□ 0.33
CLN3-251ENST00000636853 ANKRD13CQ8N6S4 541 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 RBM46Q8TBY0 533 aaKnown RBP17.12■□□□□ 0.33
CLN3-251ENST00000636853 AIPL1Q9NZN9 384 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 GABBR1Q9UBS5 961 aa17.12■□□□□ 0.33
CLN3-251ENST00000636853 AJAP1Q9UKB5 411 aaPredicted RBP17.12■□□□□ 0.33
CLN3-251ENST00000636853 PCDHA10Q9Y5I2 948 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms