RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 STRA6Q9BX79 667 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 NIFKQ9BYG3 293 aaKnown RBP11.67□□□□□ -0.54
CLN3-248ENST00000636355 ABHD16BQ9H3Z7 469 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 ZHX3Q9H4I2 956 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 AZI2Q9H6S1 392 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 MLXIPQ9HAP2 919 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 ATP6V0A4Q9HBG4 840 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 CYP26B1Q9NR63 512 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 INTS13Q9NVM9 706 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 DOCK3Q8IZD9 2030 aa11.67□□□□□ -0.54
CLN3-248ENST00000636355 NPHP3-ACAD11A0A0J9YXS1 232 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 ESPNB1AK53 854 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 RSPH10B2B2RC85 870 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 NOP56O00567 594 aaKnown RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 N4BP3O15049 544 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 CA12O43570 354 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 USO1O60763 962 aaKnown RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 COBLO75128 1261 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 STBD1O95210 358 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 GCNT3O95395 438 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 GH1P01241 217 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 RSPH10BP0C881 870 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 HOXD8P13378 290 aaPredicted RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 SFPQP23246 707 aaKnown RBP eCLIP11.66□□□□□ -0.54
CLN3-248ENST00000636355 MSNP26038 577 aaKnown RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 DNM2P50570 870 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 NCKAP1LP55160 1127 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 MAP2K5Q13163 448 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 DMP1Q13316 513 aaPredicted RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 LAMC2Q13753 1193 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 MAN2A1Q16706 1144 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 OLFML2BQ68BL8 750 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 SWSAP1Q6NVH7 229 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 TMC6Q7Z403 805 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 FILIP1Q7Z7B0 1213 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 FBXO16Q8IX29 292 aaPredicted RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 C12orf56Q8IXR9 622 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 DAW1Q8N136 415 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 MYCT1Q8N699 235 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 RETREG2Q8NC44 543 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 PPTC7Q8NI37 304 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 BBXQ8WY36 941 aaPredicted RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 HPS3Q969F9 1004 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 CEP170P1Q96L14 293 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 APBA2Q99767 749 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 JPH2Q9BR39 696 aaPredicted RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 SRRTQ9BXP5 876 aaKnown RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 KATNBL1Q9H079 304 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 TMEM206Q9H813 350 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 SEPT9Q9UHD8 586 aaPredicted RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 NRBP1Q9UHY1 535 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 ABT1Q9ULW3 272 aaKnown RBP11.66□□□□□ -0.54
CLN3-248ENST00000636355 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.66□□□□□ -0.54
CLN3-248ENST00000636355 ZMYM2Q9UBW7 1377 aa11.66□□□□□ -0.54
CLN3-248ENST00000636355 K7ENM7 598 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 CETN3O15182 167 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 TPM1P09493 284 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 TXNP10599 105 aaKnown RBP11.65□□□□□ -0.54
CLN3-248ENST00000636355 TCF7P36402 384 aaPredicted RBP11.65□□□□□ -0.54
CLN3-248ENST00000636355 RGS2P41220 211 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 SMTNP53814 917 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 CACNB1Q02641 598 aaPredicted RBP11.65□□□□□ -0.54
CLN3-248ENST00000636355 RAD51AP2Q09MP3 1159 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 TBX2Q13207 712 aaPredicted RBP11.65□□□□□ -0.54
CLN3-248ENST00000636355 PPP2R5AQ15172 486 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 ZNF720Q7Z2F6 126 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 DPP9Q86TI2 863 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 SLC9A9Q8IVB4 645 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 DHX37Q8IY37 1157 aaKnown RBP11.65□□□□□ -0.54
CLN3-248ENST00000636355 SPC24Q8NBT2 197 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 SLC7A3Q8WY07 619 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 CCDC51Q96ER9 411 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 NAP1L5Q96NT1 182 aaPredicted RBP11.65□□□□□ -0.54
CLN3-248ENST00000636355 GPR20Q99678 358 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 NTPCRQ9BSD7 190 aaKnown RBP11.65□□□□□ -0.54
CLN3-248ENST00000636355 TINF2Q9BSI4 451 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 TUBGCP2Q9BSJ2 902 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 CFHR5Q9BXR6 569 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 R3HDMLQ9H3Y0 253 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 DHX33Q9H6R0 707 aaKnown RBP11.65□□□□□ -0.54
CLN3-248ENST00000636355 METTL14Q9HCE5 456 aaKnown RBP11.65□□□□□ -0.54
CLN3-248ENST00000636355 PDLIM7Q9NR12 457 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 NRBP2Q9NSY0 501 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 FAM184BQ9ULE4 1060 aa11.65□□□□□ -0.54
CLN3-248ENST00000636355 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.65□□□□□ -0.54
CLN3-248ENST00000636355 COL1A2P08123 1366 aa11.65□□□□□ -0.55
CLN3-248ENST00000636355 GSTTP1A0A1W2PQM5 241 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 RASSF10A6NK89 507 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 ZBTB39O15060 712 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 ARIH2O95376 493 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 PTGS1P23219 599 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 NR2F2P24468 414 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 MTIF2P46199 727 aaKnown RBP11.64□□□□□ -0.55
CLN3-248ENST00000636355 STAT5BP51692 787 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 CASP5P51878 434 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 POLGP54098 1239 aaPredicted RBP11.64□□□□□ -0.55
CLN3-248ENST00000636355 GTF2BQ00403 316 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 ENPEPQ07075 957 aa11.64□□□□□ -0.55
CLN3-248ENST00000636355 ARHGAP1Q07960 439 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms