RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 IDO1P14902 403 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 DNM2P50570 870 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 SULT2A1Q06520 285 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 USH1GQ495M9 461 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 LIN52Q52LA3 116 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 WASHC2DQ5SRD0 308 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 SNX30Q5VWJ9 437 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 SUPT20HQ8NEM7 779 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 DSCC1Q9BVC3 393 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 TAOK3Q9H2K8 898 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 TUBA8Q9NY65 449 aaPredicted RBP8.54□□□□□ -1.04
VPS11-209ENST00000622309 VPS54Q9P1Q0 977 aa8.54□□□□□ -1.04
VPS11-209ENST00000622309 ZNF609O15014 1411 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 CCDC169A6NNP5 214 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 H7C1D1 291 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 SH2B2O14492 632 aaPredicted RBP8.53□□□□□ -1.04
VPS11-209ENST00000622309 ZFYP08048 801 aaPredicted RBP8.53□□□□□ -1.04
VPS11-209ENST00000622309 IGHMBP2P38935 993 aaKnown RBP8.53□□□□□ -1.04
VPS11-209ENST00000622309 MMP13P45452 471 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 FAM98CQ17RN3 349 aaKnown RBP8.53□□□□□ -1.04
VPS11-209ENST00000622309 MIGA2Q7L4E1 593 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 RALYLQ86SE5 291 aaKnown RBP8.53□□□□□ -1.04
VPS11-209ENST00000622309 SPATA24Q86W54 205 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 PDCD7Q8N8D1 485 aaKnown RBP8.53□□□□□ -1.04
VPS11-209ENST00000622309 ZNF579Q8NAF0 562 aaKnown RBP8.53□□□□□ -1.04
VPS11-209ENST00000622309 FAM13CQ8NE31 585 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 SPATA17Q96L03 361 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 DDX50Q9BQ39 737 aaKnown RBP8.53□□□□□ -1.04
VPS11-209ENST00000622309 ZNF148Q9UQR1 794 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 TCP11X1B4DZS4 312 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 HOXA2O43364 376 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 SLC26A4O43511 780 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 CCNB1P14635 433 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 GNAT2P19087 354 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 MTTPP55157 894 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 HPCAP84074 193 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 DPYDQ12882 1025 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 KLHDC7AQ5VTJ3 777 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 TMEM53Q6P2H8 277 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 USP49Q70CQ1 688 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 TRIM50Q86XT4 487 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 SLC15A3Q8IY34 581 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 ERMNQ8TAM6 284 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 DYDC2Q96IM9 177 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 MPP4Q96JB8 637 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 MTFR1LQ9H019 292 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 CSRNP2Q9H175 543 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 PFDN4Q9NQP4 134 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 ARHGEF38Q9NXL2 777 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 ZNF263O14978 683 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 MAP3K7O43318 606 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 SPATA31D3P0C874 917 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 TATP17735 454 aaPredicted RBP8.53□□□□□ -1.04
VPS11-209ENST00000622309 KIF11P52732 1056 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 TMEM259Q4ZIN3 620 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 FAAH2Q6GMR7 532 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 SPATA31D4Q6ZUB0 917 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 RIC3Q7Z5B4 369 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 NOSTRINQ8IVI9 506 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 LRRC43Q8N309 656 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 TTC8Q8TAM2 541 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 STAMQ92783 540 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 GATA6Q92908 595 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 CCDC28BQ9BUN5 200 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 PUS3Q9BZE2 481 aaKnown RBP8.53□□□□□ -1.04
VPS11-209ENST00000622309 CCDC134Q9H6E4 229 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 HPS5Q9UPZ3 1129 aa8.53□□□□□ -1.04
VPS11-209ENST00000622309 ENTPD5O75356 428 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 HARSP12081 509 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 CD97P48960 835 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 PSMC1P62191 440 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 OCRLQ01968 901 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 DMPKQ09013 629 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 GSTA3Q16772 222 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 ZC2HC1CQ53FD0 456 aaPredicted RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 THOC7Q6I9Y2 204 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 FAM196AQ6ZSG2 479 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 HS2ST1Q7LGA3 356 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 TMC3Q7Z5M5 1100 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 C2CD5Q86YS7 1000 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 ST13P4Q8IZP2 240 aaPredicted RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 MYO1HQ8N1T3 1032 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 MGARPQ8TDB4 240 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 DHX38Q92620 1227 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 KCNN1Q92952 543 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 UTP4Q969X6 686 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 DHTKD1Q96HY7 919 aaPredicted RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 ZMAT2Q96NC0 199 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 SMC6Q96SB8 1091 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 STMN4Q9H169 189 aaPredicted RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 GPCPD1Q9NPB8 672 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 EXOC1Q9NV70 894 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 DBF4Q9UBU7 674 aaPredicted RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 SRPRBQ9Y5M8 271 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 EP400Q96L91 3159 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 A0A0G2JLW4 131 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 LINC00854A0A1B0GVQ3 168 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 FTCDO95954 541 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 PLEKP08567 350 aaPredicted RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms