RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 PPFIA4O75335 1185 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 ARP10275 920 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 HSPA1LP34931 641 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 COPB2P35606 906 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 USP8P40818 1118 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 GLE1Q53GS7 698 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 HOOK2Q96ED9 719 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 GMCL1Q96IK5 515 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 ZNF577Q9BSK1 485 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 PARVGQ9HBI0 331 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 AMACRQ9UHK6 382 aa14.1□□□□□ -0.15
CCDC88A-214ENST00000621814 TISP43B9A030 160 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 DDX3XO00571 662 aaKnown RBP eCLIP14.09□□□□□ -0.151e-13■■■■□ 21.5
CCDC88A-214ENST00000621814 RAD17O75943 681 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 PSMC2P35998 433 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 STAT1P42224 750 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 CBWD6Q4V339 395 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 CBWD3Q5JTY5 395 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 CBWD5Q5RIA9 395 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 FOXR2Q6PJQ5 311 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 MOXD1Q6UVY6 613 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 CDAN1Q8IWY9 1227 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 GMCL1P1Q8NEA9 526 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 METTL14Q9HCE5 456 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 SIX2Q9NPC8 291 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 GDF3Q9NR23 364 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 RNF14Q9UBS8 474 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 DNAJC12Q9UKB3 198 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 LY75O60449 1722 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 ZNF233A6NK53 670 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 GCOM1H8Y6P7 765 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 EXOC3O60645 756 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 POLR2MP0CAP2 368 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 GALCP54803 685 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 GUCY1A3Q02108 690 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 DRAP1Q14919 205 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 CEP85LQ5SZL2 805 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 DPY19L2P1Q6NXN4 242 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 TPCN2Q8NHX9 752 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 CELF4Q9BZC1 486 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 PLCB1Q9NQ66 1216 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 SHTN1A0MZ66 631 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 ONECUT3O60422 494 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 HOXA7P31268 230 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 ALS2CLQ60I27 953 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 HS2ST1Q7LGA3 356 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 HSD17B14Q9BPX1 270 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 DPH5Q9H2P9 285 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 FRMD4BQ9Y2L6 1034 aa14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 ZBTB12Q9Y330 459 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 NOC2LQ9Y3T9 749 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 BZW2Q9Y6E2 419 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-214ENST00000621814 IGLV3-22A0A075B6J6 115 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 SART1O43290 800 aaKnown RBP14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 PPIP5K2O43314 1243 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 ERVK-9P63128 1117 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 ARHGAP27Q6ZUM4 889 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 CAVIN3Q969G5 261 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 HOMER2Q9NSB8 354 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 TMEM51Q9NW97 253 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 TMEM110-MUSTN1A8MSY1 372 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 C21orf2O43822 256 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 ZNF211Q13398 564 aaPredicted RBP14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 IFI16Q16666 785 aaKnown RBP14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 C1orf186Q6ZWK4 172 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 ZC3H3Q8IXZ2 948 aaKnown RBP14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 CPXCR1Q8N123 301 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 POLR3CQ9BUI4 534 aaPredicted RBP14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 GLIS2Q9BZE0 524 aaPredicted RBP14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 ARHGEF10LQ9HCE6 1279 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 PLAAQ9Y263 795 aa14.08□□□□□ -0.16
CCDC88A-214ENST00000621814 CC2D2BQ6DHV5 1058 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 UBLCP1Q8WVY7 318 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 UNC45AQ9H3U1 944 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 TAS2R14Q9NYV8 317 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 SERPINA10Q9UK55 444 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 SMCHD1A6NHR9 2005 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 PGRMC1O00264 195 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 RPS6KA5O75582 802 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 CIITAP33076 1130 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 FMO5P49326 533 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 LLGL1Q15334 1064 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 LNX1Q8TBB1 728 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 SLC35G2Q8TBE7 412 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 LXNQ9BS40 222 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 TMOD2Q9NZR1 351 aa14.07□□□□□ -0.16
CCDC88A-214ENST00000621814 ARHGEF35A5YM69 484 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 TMEM150BA6NC51 233 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 DAPK3O43293 454 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 LRRC57Q8N9N7 239 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 ELMO3Q96BJ8 720 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 RNPC3Q96LT9 517 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 SH3GL2Q99962 352 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 THSD7AQ9UPZ6 1657 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 UBR3Q6ZT12 1888 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 ARFGEF1Q9Y6D6 1849 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 TTI1O43156 1089 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 FGGP02679 453 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 FLT3P36888 993 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 PRELPP51888 382 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms