RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FGFR4P22455 802 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 BMP8BP34820 402 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 DNM1Q05193 864 aaKnown RBP15.09■□□□□ 0.01
LINC00540-202ENST00000616974 LPIN1Q14693 890 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 RETREG2Q8NC44 543 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 SNX29Q8TEQ0 813 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 EPSTI1Q96J88 318 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 PNMA5Q96PV4 448 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 OSMRQ99650 979 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 ZSWIM4Q9H7M6 989 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 GPRC5CQ9NQ84 441 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 BRD1O95696 1058 aa15.08■□□□□ 0.01
LINC00540-202ENST00000616974 DDIT3P35638 169 aa15.08■□□□□ 0.01
LINC00540-202ENST00000616974 CCT6AP40227 531 aaKnown RBP15.08■□□□□ 0.01
LINC00540-202ENST00000616974 MRPS6P82932 125 aaKnown RBP15.08■□□□□ 0.01
LINC00540-202ENST00000616974 TBC1D8BQ0IIM8 1120 aa15.08■□□□□ 0.01
LINC00540-202ENST00000616974 ORC2Q13416 577 aaPredicted RBP15.08■□□□□ 0.01
LINC00540-202ENST00000616974 XKR9Q5GH70 373 aa15.08■□□□□ 0.01
LINC00540-202ENST00000616974 HABP4Q5JVS0 413 aaKnown RBP15.08■□□□□ 0.01
LINC00540-202ENST00000616974 DTHD1Q6ZMT9 781 aa15.08■□□□□ 0.01
LINC00540-202ENST00000616974 SPRED2Q7Z698 418 aa15.08■□□□□ 0.01
LINC00540-202ENST00000616974 NRBP2Q9NSY0 501 aa15.08■□□□□ 0.01
LINC00540-202ENST00000616974 DDX19AQ9NUU7 478 aaKnown RBP15.08■□□□□ 0.01
LINC00540-202ENST00000616974 FBXO2Q9UK22 296 aaPredicted RBP15.08■□□□□ 0.01
LINC00540-202ENST00000616974 KIAA1024Q9UPX6 916 aa15.08■□□□□ 0.01
LINC00540-202ENST00000616974 MUC3AQ02505 3323 aa15.08■□□□□ 0.01
LINC00540-202ENST00000616974 COL1A2P08123 1366 aa15.08■□□□□ 0.01
LINC00540-202ENST00000616974 IGKV6-21A0A0C4DH24 114 aa15.08■□□□□ 0
LINC00540-202ENST00000616974 SMIM35A0A1B0GVV1 85 aa15.08■□□□□ 0
LINC00540-202ENST00000616974 GPR32O75388 356 aa15.08■□□□□ 0
LINC00540-202ENST00000616974 PRPHP41219 470 aa15.08■□□□□ 0
LINC00540-202ENST00000616974 RARRES1P49788 294 aa15.08■□□□□ 0
LINC00540-202ENST00000616974 TAF2Q6P1X5 1199 aa15.08■□□□□ 0
LINC00540-202ENST00000616974 FAM167AQ96KS9 214 aa15.08■□□□□ 0
LINC00540-202ENST00000616974 CSRNP2Q9H175 543 aa15.08■□□□□ 0
LINC00540-202ENST00000616974 BRWD1Q9NSI6 2320 aa15.08■□□□□ 0
LINC00540-202ENST00000616974 MYOGP15173 224 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 RPA1P27694 616 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 CD52P31358 61 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 PBX2P40425 430 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 DEFB103AP81534 67 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 GRB10Q13322 594 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 PPIGQ13427 754 aaKnown RBP eCLIP15.07■□□□□ 0
LINC00540-202ENST00000616974 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.07■□□□□ 0
LINC00540-202ENST00000616974 RNPC3Q96LT9 517 aaKnown RBP15.07■□□□□ 0
LINC00540-202ENST00000616974 AKT3Q9Y243 479 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 A0A087X0B3 334 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 USO1O60763 962 aaKnown RBP15.07■□□□□ 0
LINC00540-202ENST00000616974 MAFO75444 373 aaPredicted RBP15.07■□□□□ 0
LINC00540-202ENST00000616974 CXCL10P02778 98 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 NLRP11P59045 1033 aaKnown RBP15.07■□□□□ 0
LINC00540-202ENST00000616974 FBXO47Q5MNV8 452 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 LINC01599Q8WXQ3 324 aa15.07■□□□□ 0
LINC00540-202ENST00000616974 DHX33Q9H6R0 707 aaKnown RBP15.07■□□□□ 0
LINC00540-202ENST00000616974 NOC2LQ9Y3T9 749 aaKnown RBP15.07■□□□□ 0
LINC00540-202ENST00000616974 ZBBXA8MT70 800 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 RABGGTBP53611 331 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 PDIA5Q14554 519 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 EMC2Q15006 297 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 KARSQ15046 597 aaKnown RBP15.06■□□□□ 0
LINC00540-202ENST00000616974 TPRNQ4KMQ1 711 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 FAM26DQ5JW98 314 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 RASIP1Q5U651 963 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 LINC00301Q8NCQ3 95 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 POLR3CQ9BUI4 534 aaPredicted RBP15.06■□□□□ 0
LINC00540-202ENST00000616974 BHMT2Q9H2M3 363 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 ADAMTS10Q9H324 1103 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 MINDY3Q9H8M7 445 aa15.06■□□□□ 0
LINC00540-202ENST00000616974 MGEA5O60502 916 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 ARHGEF15O94989 841 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 LYPLA2O95372 231 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 FGBP02675 491 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 RAD51AP2Q09MP3 1159 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 PLEKHG4Q58EX7 1191 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 RPAINQ86UA6 219 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 RTN4RL1Q86UN2 441 aaPredicted RBP15.05■□□□□ 0
LINC00540-202ENST00000616974 RHPN2Q8IUC4 686 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 PANK2Q9BZ23 570 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 CELF4Q9BZC1 486 aaKnown RBP15.05■□□□□ 0
LINC00540-202ENST00000616974 ZSCAN16Q9H4T2 348 aaPredicted RBP15.05■□□□□ 0
LINC00540-202ENST00000616974 GDPD2Q9HCC8 539 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 CEP131Q9UPN4 1083 aa15.05■□□□□ 0
LINC00540-202ENST00000616974 PRRC2BQ5JSZ5 2229 aaKnown RBP15.05■□□□□ -0
LINC00540-202ENST00000616974 LAD1O00515 517 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 NASPP49321 788 aaPredicted RBP15.05■□□□□ -0
LINC00540-202ENST00000616974 FXR1P51114 621 aaKnown RBP eCLIP15.05■□□□□ -0
LINC00540-202ENST00000616974 GPC3P51654 580 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 POLGP54098 1239 aaPredicted RBP15.05■□□□□ -0
LINC00540-202ENST00000616974 BECN1Q14457 450 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 SLC39A14Q15043 492 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 FAM117BQ6P1L5 589 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 CCDC155Q8N6L0 562 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 ASAP3Q8TDY4 903 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 BSNDQ8WZ55 320 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 RUSC1Q9BVN2 902 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 IFIH1Q9BYX4 1025 aaKnown RBP15.05■□□□□ -0
LINC00540-202ENST00000616974 TMX1Q9H3N1 280 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 TUFT1Q9NNX1 390 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 TSHZ2Q9NRE2 1034 aa15.05■□□□□ -0
LINC00540-202ENST00000616974 USP20Q9Y2K6 914 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms