RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TRIM17Q9Y577 477 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 BCORQ6W2J9 1755 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 AURKAO14965 403 aa6□□□□□ -1.45
LINC00540-201ENST00000611481 CYP2C8P10632 490 aa6□□□□□ -1.45
LINC00540-201ENST00000611481 SMAD4Q13485 552 aaKnown RBP6□□□□□ -1.45
LINC00540-201ENST00000611481 PPP2R5DQ14738 602 aa6□□□□□ -1.45
LINC00540-201ENST00000611481 STYK1Q6J9G0 422 aa6□□□□□ -1.45
LINC00540-201ENST00000611481 UNC5AQ6ZN44 842 aa6□□□□□ -1.45
LINC00540-201ENST00000611481 LGI4Q8N135 537 aa6□□□□□ -1.45
LINC00540-201ENST00000611481 CHST13Q8NET6 341 aa6□□□□□ -1.45
LINC00540-201ENST00000611481 FBLN5Q9UBX5 448 aa6□□□□□ -1.45
LINC00540-201ENST00000611481 ZNF214Q9UL59 606 aaPredicted RBP6□□□□□ -1.45
LINC00540-201ENST00000611481 ZNF831Q5JPB2 1677 aa6□□□□□ -1.45
LINC00540-201ENST00000611481 GUCY2CP25092 1073 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 SEPHS1P49903 392 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 ZYXQ15942 572 aaKnown RBP5.99□□□□□ -1.45
LINC00540-201ENST00000611481 SLC4A8Q2Y0W8 1093 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 FAM124AQ86V42 546 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 RBBP8NLQ8NC74 664 aaPredicted RBP5.99□□□□□ -1.45
LINC00540-201ENST00000611481 USP33Q8TEY7 942 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 DVL3Q92997 716 aaPredicted RBP5.99□□□□□ -1.45
LINC00540-201ENST00000611481 ARMC5Q96C12 935 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 DDX11Q96FC9 970 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 MASTLQ96GX5 879 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 SORCS2Q96PQ0 1159 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 MTA3Q9BTC8 594 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 BCL11AQ9H165 835 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 WHRNQ9P202 907 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 NARFQ9UHQ1 456 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 EVC2Q86UK5 1308 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 RPTORQ8N122 1335 aa5.99□□□□□ -1.45
LINC00540-201ENST00000611481 PIEZO1Q92508 2521 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 HTTP42858 3142 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 SBNO2Q9Y2G9 1366 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 STXBP3O00186 592 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 CBFA2T2O43439 604 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 SRGNP10124 158 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 RPL13P26373 211 aaKnown RBP5.98□□□□□ -1.45
LINC00540-201ENST00000611481 MRPL58Q14197 206 aaKnown RBP5.98□□□□□ -1.45
LINC00540-201ENST00000611481 FAM26FQ5R3K3 315 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 FBXW10Q5XX13 1052 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 WWC2Q6AWC2 1192 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 PRR5LQ6MZQ0 368 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 BORAQ6PGQ7 559 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 OTOP1Q7RTM1 612 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 RASAL3Q86YV0 1011 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 RTKN2Q8IZC4 609 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 GORASP1Q9BQQ3 440 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 R3HDMLQ9H3Y0 253 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 GPRC5DQ9NZD1 345 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 GULP1Q9UBP9 304 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 PGAP2Q9UHJ9 254 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 CENPFP49454 3210 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 COL4A5P29400 1685 aa5.98□□□□□ -1.45
LINC00540-201ENST00000611481 NPHP1O15259 732 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 PPP1R11O60927 126 aaPredicted RBP5.97□□□□□ -1.45
LINC00540-201ENST00000611481 C8BP07358 591 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 THBS2P35442 1172 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 ADCY4Q8NFM4 1077 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 HAUS7Q99871 368 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 MCMBPQ9BTE3 642 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 C11orf84Q9BUA3 381 aaPredicted RBP5.97□□□□□ -1.45
LINC00540-201ENST00000611481 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.97□□□□□ -1.45
LINC00540-201ENST00000611481 INVSQ9Y283 1065 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 PTPN22Q9Y2R2 807 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 NR2E3Q9Y5X4 410 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 ARFGEF2Q9Y6D5 1785 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 ZNF536O15090 1300 aa5.97□□□□□ -1.45
LINC00540-201ENST00000611481 SOS1Q07889 1333 aaPredicted RBP5.97□□□□□ -1.45
LINC00540-201ENST00000611481 TRBV23OR9-2A0A075B6M9 112 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 C2orf71A6NGG8 1288 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 MROH6A6NGR9 719 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 PHKG2P15735 406 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 PAMP19021 973 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 GLB1LQ6UWU2 654 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 RUFY4Q6ZNE9 571 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 CPNE8Q86YQ8 564 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 IFNL2Q8IZJ0 200 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 KYQ8NBH2 561 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 ZNF333Q96JL9 665 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 GBP3Q9H0R5 595 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 STAP2Q9UGK3 403 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 BACE2Q9Y5Z0 518 aa5.96□□□□□ -1.46
LINC00540-201ENST00000611481 COL15A1P39059 1388 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 NPHP3-ACAD11A0A0J9YXS1 232 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 ADM5C9JUS6 153 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 NPHS1O60500 1241 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 C6P13671 934 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 TACR2P21452 398 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 GDF5P43026 501 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 GMPSP49915 693 aaPredicted RBP5.95□□□□□ -1.46
LINC00540-201ENST00000611481 HMGA2P52926 109 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 RRS1Q15050 365 aaKnown RBP5.95□□□□□ -1.46
LINC00540-201ENST00000611481 DPY19L1Q2PZI1 675 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 TBC1D9BQ66K14 1250 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 ETV3LQ6ZN32 361 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 KRT26Q7Z3Y9 468 aa5.95□□□□□ -1.46
LINC00540-201ENST00000611481 SSBP3Q9BWW4 388 aaPredicted RBP5.95□□□□□ -1.46
LINC00540-201ENST00000611481 RTL1A6NKG5 1358 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 ANKRD26Q9UPS8 1709 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms