RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CTTNQ14247 550 aaKnown RBP21.93■■□□□ 1.1
UPF1-207ENST00000599848 RNF180Q86T96 592 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 MICALL2Q8IY33 904 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 SH3RF3Q8TEJ3 882 aaPredicted RBP21.93■■□□□ 1.1
UPF1-207ENST00000599848 NFU1Q9UMS0 254 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 WDR19Q8NEZ3 1342 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 EFHC2Q5JST6 749 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 MTMR6Q9Y217 621 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 IQANK1A0A1B0GTG1 560 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 COBLO75128 1261 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 MYO1DO94832 1006 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 ARHGAP15Q53QZ3 475 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 TRIM72Q6ZMU5 477 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 TRIM15Q9C019 465 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 CNOT7Q9UIV1 285 aaKnown RBP21.92■■□□□ 1.1
UPF1-207ENST00000599848 KDM6AO15550 1401 aaPredicted RBP21.92■■□□□ 1.1
UPF1-207ENST00000599848 ZFXP17010 805 aaPredicted RBP21.92■■□□□ 1.1
UPF1-207ENST00000599848 SCP2P22307 547 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 KRT17Q04695 432 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 LAMB3Q13751 1172 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 SP110Q9HB58 689 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 KLHL8Q9P2G9 620 aaPredicted RBP21.92■■□□□ 1.1
UPF1-207ENST00000599848 ADGBQ8N7X0 1667 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 PTPN12Q05209 780 aaKnown RBP21.92■■□□□ 1.1
UPF1-207ENST00000599848 RNF217Q8TC41 542 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 RASGRP4Q8TDF6 673 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 DACT3Q96B18 629 aaPredicted RBP21.92■■□□□ 1.1
UPF1-207ENST00000599848 SH3KBP1Q96B97 665 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.92■■□□□ 1.18e-7■■□□□ 11.7
UPF1-207ENST00000599848 ENOX1Q8TC92 643 aaKnown RBP21.92■■□□□ 1.1
UPF1-207ENST00000599848 DOLKQ9UPQ8 538 aa21.92■■□□□ 1.1
UPF1-207ENST00000599848 FAM95CA0A1B0GW59 222 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 NBPF26B4DH59 902 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 STKLD1Q8NE28 680 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 NUDT12Q9BQG2 462 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 LSG1Q9H089 658 aaKnown RBP21.91■■□□□ 1.1
UPF1-207ENST00000599848 PRDM10Q9NQV6 1147 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 PFASO15067 1338 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 KCNQ4P56696 695 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 EHHADHQ08426 723 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 DCLK2Q8N568 766 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 SMARCAD1Q9H4L7 1026 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 LRRN2O75325 713 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 TMTC3Q6ZXV5 915 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 CENPUQ71F23 418 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 SLC4A7Q9Y6M7 1214 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 ACCSLQ4AC99 568 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 SRPK1Q96SB4 655 aaKnown RBP21.91■■□□□ 1.1
UPF1-207ENST00000599848 TJP2Q9UDY2 1190 aa21.91■■□□□ 1.1
UPF1-207ENST00000599848 ASAP2O43150 1006 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 RWDD2BP57060 319 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 TTC19Q6DKK2 380 aaPredicted RBP21.9■■□□□ 1.1
UPF1-207ENST00000599848 STYK1Q6J9G0 422 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 RHPN2Q8IUC4 686 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 DEPDC1BQ8WUY9 529 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 MIF4GDA9UHW6 222 aaKnown RBP21.9■■□□□ 1.1
UPF1-207ENST00000599848 PRKAB2O43741 272 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 TXNP10599 105 aaKnown RBP21.9■■□□□ 1.1
UPF1-207ENST00000599848 ZBED6P86452 979 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 PRKCQQ04759 706 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 RSBN1LQ6PCB5 846 aaPredicted RBP21.9■■□□□ 1.1
UPF1-207ENST00000599848 ELP3Q9H9T3 547 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 HUNKP57058 714 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 RASSF7Q02833 373 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 TAP1Q03518 808 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 PDCD2Q16342 344 aaPredicted RBP21.9■■□□□ 1.1
UPF1-207ENST00000599848 DCP1BQ8IZD4 617 aaKnown RBP21.9■■□□□ 1.1
UPF1-207ENST00000599848 LRRC37BQ96QE4 947 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 RPAP3Q9H6T3 665 aaPredicted RBP21.9■■□□□ 1.1
UPF1-207ENST00000599848 PPP2R2CQ9Y2T4 447 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 POC1B-GALNT4F8VUJ3 575 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 SLC26A4O43511 780 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 CYP21A2P08686 494 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 GUCY2FP51841 1108 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 KIF23Q02241 960 aaPredicted RBP21.9■■□□□ 1.1
UPF1-207ENST00000599848 ATG16L1Q676U5 607 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 CAPN12Q6ZSI9 719 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 UNC13DQ70J99 1090 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 PPP1R2P1Q96PQ5 205 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 FANCLQ9NW38 375 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 PCDHA10Q9Y5I2 948 aa21.9■■□□□ 1.1
UPF1-207ENST00000599848 HOXA2O43364 376 aa21.89■■□□□ 1.1
UPF1-207ENST00000599848 SERPINB6P35237 376 aa21.89■■□□□ 1.1
UPF1-207ENST00000599848 PHEXP78562 749 aa21.89■■□□□ 1.1
UPF1-207ENST00000599848 CDK17Q00537 523 aa21.89■■□□□ 1.1
UPF1-207ENST00000599848 R3HDM1Q15032 1099 aaKnown RBP21.89■■□□□ 1.1
UPF1-207ENST00000599848 CLIC6Q96NY7 704 aa21.89■■□□□ 1.1
UPF1-207ENST00000599848 SLC9A2Q9UBY0 812 aa21.89■■□□□ 1.1
UPF1-207ENST00000599848 H3BRJ5 948 aa21.89■■□□□ 1.1
UPF1-207ENST00000599848 YWHAHQ04917 246 aaPredicted RBP21.89■■□□□ 1.1
UPF1-207ENST00000599848 PGBD3Q8N328 593 aa21.89■■□□□ 1.1
UPF1-207ENST00000599848 CFAP61Q8NHU2 1237 aa21.89■■□□□ 1.1
UPF1-207ENST00000599848 ULK4Q96C45 1275 aa21.89■■□□□ 1.1
UPF1-207ENST00000599848 STK36Q9NRP7 1315 aa21.89■■□□□ 1.09
UPF1-207ENST00000599848 PLCG1P19174 1290 aa21.89■■□□□ 1.09
UPF1-207ENST00000599848 KCNA4P22459 653 aa21.89■■□□□ 1.09
UPF1-207ENST00000599848 SPATA2LQ8IUW3 424 aaPredicted RBP21.89■■□□□ 1.09
UPF1-207ENST00000599848 ZSWIM5Q9P217 1185 aa21.89■■□□□ 1.09
UPF1-207ENST00000599848 GFPT2O94808 682 aa21.89■■□□□ 1.09
UPF1-207ENST00000599848 SUN1O94901 812 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms