RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ALG13Q9NP73 1137 aaKnown RBP11.06□□□□□ -0.64
VRK3-216ENST00000599342 RGS18Q9NS28 235 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 PLAGL2Q9UPG8 496 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 GRXCR2A6NFK2 248 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 TBKBP1A7MCY6 615 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 MGEA5O60502 916 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 GPR32O75388 356 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 XBP1P17861 261 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 GATMP50440 423 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 TBC1D8BQ0IIM8 1120 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 NONOQ15233 471 aaKnown RBP eCLIP11.05□□□□□ -0.64
VRK3-216ENST00000599342 Q4G0T1 1027 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 MIER3Q7Z3K6 550 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 FAM228AQ86W67 206 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 FAM178BQ8IXR5 827 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 ZNF710Q8N1W2 664 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 LRRC71Q8N4P6 559 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 DAGLBQ8NCG7 672 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 RDM1Q8NG50 284 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 SLC5A5Q92911 643 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 SLKQ9H2G2 1235 aaPredicted RBP11.05□□□□□ -0.64
VRK3-216ENST00000599342 UNC45AQ9H3U1 944 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 AAASQ9NRG9 546 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 PCDHB12Q9Y5F1 795 aa11.05□□□□□ -0.64
VRK3-216ENST00000599342 C9IYK1 514 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 ZNF862O60290 1169 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 PSMD10O75832 226 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 TDP2O95551 362 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 ITGB1P05556 798 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 ZSCAN20P17040 1043 aaPredicted RBP11.04□□□□□ -0.64
VRK3-216ENST00000599342 NLRP11P59045 1033 aaKnown RBP11.04□□□□□ -0.64
VRK3-216ENST00000599342 HYAL1Q12794 435 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 COL19A1Q14993 1142 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 UGCGQ16739 394 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 MOXD1Q6UVY6 613 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 KRT25Q7Z3Z0 450 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 GJD3Q8N144 294 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 KLHL23Q8NBE8 558 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 GJA10Q969M2 543 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 AIFM3Q96NN9 605 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 IGFLR1Q9H665 355 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 EPHX3Q9H6B9 360 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 ELAC1Q9H777 363 aaKnown RBP11.04□□□□□ -0.64
VRK3-216ENST00000599342 ATP6V0A4Q9HBG4 840 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 TMEM161AQ9NX61 479 aa11.04□□□□□ -0.64
VRK3-216ENST00000599342 SEPT9Q9UHD8 586 aaPredicted RBP11.04□□□□□ -0.64
VRK3-216ENST00000599342 DDX25Q9UHL0 483 aaKnown RBP11.04□□□□□ -0.64
VRK3-216ENST00000599342 LOXHD1Q8IVV2 1947 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 MYH9P35579 1960 aaKnown RBP11.03□□□□□ -0.64
VRK3-216ENST00000599342 CYP3A7-CYP3A51PA0A087WV96 503 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 CCDC194A0A1B0GVG4 234 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 M0R2N6 131 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 HOXA2O43364 376 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 EDIL3O43854 480 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 EIF4BP23588 611 aaKnown RBP11.03□□□□□ -0.64
VRK3-216ENST00000599342 CYP3A7P24462 503 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 NDUFV1P49821 464 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 GPC3P51654 580 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 SCRN1Q12765 414 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 INF2Q27J81 1249 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 CTC1Q2NKJ3 1217 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 LETM2Q2VYF4 491 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 MTERF2Q49AM1 385 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 TMEM31Q5JXX7 168 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 FAM102BQ5T8I3 360 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 THNSL1Q8IYQ7 743 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 ABI1Q8IZP0 508 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 LINC01465Q8N7H1 131 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 SPPL3Q8TCT6 385 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 POF1BQ8WVV4 589 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 NLRP7Q8WX94 980 aa11.03□□□□□ -0.64
VRK3-216ENST00000599342 TTC28Q96AY4 2481 aa11.02□□□□□ -0.64
VRK3-216ENST00000599342 TBX10O75333 385 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 FGFR1P11362 822 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 LAG3P18627 525 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 DNM2P50570 870 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 CDC42EP1Q00587 391 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 UBE3AQ05086 875 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 CAMK1Q14012 370 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 ANKRD1Q15327 319 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 CLUL1Q15846 466 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 CSPP1Q1MSJ5 1256 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 XKR3Q5GH77 459 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 ETNPPLQ8TBG4 499 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 MICAL1Q8TDZ2 1067 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 ZNF668Q96K58 619 aaPredicted RBP11.02□□□□□ -0.65
VRK3-216ENST00000599342 PHF20Q9BVI0 1012 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 ADAMTS10Q9H324 1103 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 CD320Q9NPF0 282 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 PRKAG3Q9UGI9 489 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 KCNJ14Q9UNX9 436 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 STK36Q9NRP7 1315 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 KIAA1671Q9BY89 1806 aa11.02□□□□□ -0.65
VRK3-216ENST00000599342 EVPLQ92817 2033 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 FSD2A1L4K1 749 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 PI4K2BG5E9Z4 385 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 LINC01565O15544 149 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 SLC37A4O43826 429 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 MARCH6O60337 910 aa11.01□□□□□ -0.65
VRK3-216ENST00000599342 DKC1O60832 514 aaKnown RBP eCLIP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms