RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 CAP1Q01518 475 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 TBC1D8BQ0IIM8 1120 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 TARBP2Q15633 366 aaKnown RBP16.87■□□□□ 0.29
TRIM28-209ENST00000597423 GNASQ5JWF2 1037 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 MAP3K21Q5TCX8 1036 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 MYOCDQ8IZQ8 938 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 RETREG2Q8NC44 543 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 RNF214Q8ND24 703 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 C16orf70Q9BSU1 422 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 MRPL44Q9H9J2 332 aaKnown RBP16.87■□□□□ 0.29
TRIM28-209ENST00000597423 CBX8Q9HC52 389 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 HMX1Q9NP08 348 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-209ENST00000597423 SLC39A2Q9NP94 309 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 OLFML3Q9NRN5 406 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 PCDHB13Q9Y5F0 798 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 DOCK3Q8IZD9 2030 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 BICDL2A1A5D9 508 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 RRN3P2A6NIE6 340 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 PPP1R3GB7ZBB8 358 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 H0YCG3 227 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 IKBKBO14920 756 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 MAFO75444 373 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 MYL3P08590 195 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 C6orf222P0C671 652 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 PLS3P13797 630 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 PRCPP42785 496 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 CACNB1Q02641 598 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 EHHADHQ08426 723 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 STK4Q13043 487 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 ALCAMQ13740 583 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 TPD52L1Q16890 204 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 ODR4Q5SWX8 454 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 C11orf57Q6ZUT1 292 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 MAEAQ7L5Y9 396 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 FAM178BQ8IXR5 827 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 ADSSL1Q8N142 457 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 GUF1Q8N442 669 aaKnown RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 ENOX1Q8TC92 643 aaKnown RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 ANP32BQ92688 251 aaKnown RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 UPF3AQ9H1J1 476 aaKnown RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 DHX33Q9H6R0 707 aaKnown RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 GRPEL1Q9HAV7 217 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 XPNPEP3Q9NQH7 507 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 PDLIM7Q9NR12 457 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 DDX20Q9UHI6 824 aaKnown RBP16.86■□□□□ 0.29
TRIM28-209ENST00000597423 RWDD2AQ9UIY3 292 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 PTPN22Q9Y2R2 807 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 COL1A2P08123 1366 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 MCM3APO60318 1980 aa16.86■□□□□ 0.29
TRIM28-209ENST00000597423 TMEM150BA6NC51 233 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 ADCY6O43306 1168 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 FGFR1OPO95684 399 aaKnown RBP16.85■□□□□ 0.29
TRIM28-209ENST00000597423 INHAP05111 366 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 TMOD1P28289 359 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 MYL5Q02045 173 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 TRIM32Q13049 653 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 PAK1Q13153 545 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 EMC2Q15006 297 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 PPP2R5AQ15172 486 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 IER5Q5VY09 327 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 KLHL10Q6JEL2 608 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 RNF180Q86T96 592 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 SFR1Q86XK3 245 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 TRIM50Q86XT4 487 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 PCSK9Q8NBP7 692 aaKnown RBP16.85■□□□□ 0.29
TRIM28-209ENST00000597423 TSG101Q99816 390 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 SH2D3AQ9BRG2 576 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 MTG1Q9BT17 334 aaPredicted RBP16.85■□□□□ 0.29
TRIM28-209ENST00000597423 RNPEPQ9H4A4 650 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 GDAQ9Y2T3 454 aa16.85■□□□□ 0.29
TRIM28-209ENST00000597423 SFI1A8K8P3 1242 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 RSPH10B2B2RC85 870 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 ASAP2O43150 1006 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 RSPH10BP0C881 870 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 ZNF286BP0CG31 522 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 GNAT1P11488 350 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 INSRRP14616 1297 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 CCND3P30281 292 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-209ENST00000597423 DMP1Q13316 513 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-209ENST00000597423 SMYD4Q8IYR2 804 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-209ENST00000597423 SPIRE2Q8WWL2 714 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 NELFBQ8WX92 580 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 TBC1D7Q9P0N9 293 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 PCDHA2Q9Y5H9 948 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 PTCH2Q9Y6C5 1203 aa16.84■□□□□ 0.29
TRIM28-209ENST00000597423 EIF3DO15371 548 aaKnown RBP eCLIP16.83■□□□□ 0.28
TRIM28-209ENST00000597423 GCNT3O95395 438 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 F2P00734 622 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 PTGS1P23219 599 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 CCNE1P24864 410 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 PSEN2P49810 448 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 PPFIA1Q13136 1202 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 MXD4Q14582 209 aaPredicted RBP16.83■□□□□ 0.28
TRIM28-209ENST00000597423 MFSD10Q14728 455 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 IQCB1Q15051 598 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 SPATA1Q5VX52 437 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 ZNF720Q7Z2F6 126 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 LUZP1Q86V48 1076 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 AOPEPQ8N6M6 819 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 KIAA0895Q8NCT3 520 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms