RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 DDX41Q9UJV9 622 aaKnown RBP10.61□□□□□ -0.71
TRIM28-208ENST00000597172 VAV3Q9UKW4 847 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 TELO2Q9Y4R8 837 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 TET1Q8NFU7 2136 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 FAM237AA0A1B0GTK4 181 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 A0A1B0GVL5 298 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 DDX11L8A8MPP1 907 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 EML1O00423 815 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 MARCH6O60337 910 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 ARIH2O95376 493 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 LIG1P18858 919 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 LONP1P36776 959 aaKnown RBP10.6□□□□□ -0.71
TRIM28-208ENST00000597172 GJA9P57773 515 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 ERVK-21P61565 698 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 SMAD2Q15796 467 aaKnown RBP10.6□□□□□ -0.71
TRIM28-208ENST00000597172 LY6KQ17RY6 165 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 GNPTABQ3T906 1256 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 CCDC62Q6P9F0 684 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 PABPC5Q96DU9 382 aaKnown RBP10.6□□□□□ -0.71
TRIM28-208ENST00000597172 TGS1Q96RS0 853 aaKnown RBP10.6□□□□□ -0.71
TRIM28-208ENST00000597172 RIT2Q99578 217 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 MMTAG2Q9BU76 263 aaKnown RBP10.6□□□□□ -0.71
TRIM28-208ENST00000597172 UPF3AQ9H1J1 476 aaKnown RBP10.6□□□□□ -0.71
TRIM28-208ENST00000597172 HPSEQ9Y251 543 aa10.6□□□□□ -0.71
TRIM28-208ENST00000597172 SCN5AQ14524 2016 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 GOLGA6L4A6NEF3 574 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 POTEMA6NI47 508 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 GALR2O43603 387 aaPredicted RBP10.59□□□□□ -0.71
TRIM28-208ENST00000597172 B4GALT4O60513 344 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 GAS7O60861 476 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 CCNE2O96020 404 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 TGFB3P10600 412 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 NDUFA8P51970 172 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 PPP2R5CQ13362 524 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 SNW1Q13573 536 aaKnown RBP10.59□□□□□ -0.71
TRIM28-208ENST00000597172 ITGA7Q13683 1181 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 ACVR2BQ13705 512 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 PUM1Q14671 1186 aaKnown RBP eCLIP10.59□□□□□ -0.71
TRIM28-208ENST00000597172 ACAP1Q15027 740 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 LRCH2Q5VUJ6 765 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 FSIP1Q8NA03 581 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 ENGASEQ8NFI3 743 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 MRPS27Q92552 414 aaKnown RBP10.59□□□□□ -0.71
TRIM28-208ENST00000597172 CDHR1Q96JP9 859 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 AK8Q96MA6 479 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 SENP7Q9BQF6 1050 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 ZBED2Q9BTP6 218 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 PANK2Q9BZ23 570 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 UNC45AQ9H3U1 944 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 ABHD16BQ9H3Z7 469 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 VTA1Q9NP79 307 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 TBC1D22BQ9NU19 505 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 LRWD1Q9UFC0 647 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 ZHX1Q9UKY1 873 aaPredicted RBP10.59□□□□□ -0.71
TRIM28-208ENST00000597172 OTOGLQ3ZCN5 2332 aa10.59□□□□□ -0.71
TRIM28-208ENST00000597172 NFASCO94856 1347 aa10.58□□□□□ -0.71
TRIM28-208ENST00000597172 MAST4O15021 2626 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 A0A087X0B3 334 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.58□□□□□ -0.72
TRIM28-208ENST00000597172 DDX39AO00148 427 aaKnown RBP10.58□□□□□ -0.72
TRIM28-208ENST00000597172 SORBS3O60504 671 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 CABYRO75952 493 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 TXNP10599 105 aaKnown RBP10.58□□□□□ -0.72
TRIM28-208ENST00000597172 PFKFB1P16118 471 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 UBA1P22314 1058 aaKnown RBP10.58□□□□□ -0.72
TRIM28-208ENST00000597172 PTGS1P23219 599 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 ECM1Q16610 540 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 TMEM266Q2M3C6 531 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 KCNV1Q6PIU1 500 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 CXCL17Q6UXB2 119 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 CYFIP1Q7L576 1253 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 FRMD5Q7Z6J6 570 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 FMR1NBQ8N0W7 255 aaPredicted RBP10.58□□□□□ -0.72
TRIM28-208ENST00000597172 LRRC15Q8TF66 581 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 COPS5Q92905 334 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 MRPL38Q96DV4 380 aaKnown RBP10.58□□□□□ -0.72
TRIM28-208ENST00000597172 HSD17B14Q9BPX1 270 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 TEKT3Q9BXF9 490 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 SEZ6LQ9BYH1 1024 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 CCSER1Q9C0I3 900 aa10.58□□□□□ -0.72
TRIM28-208ENST00000597172 ADCY6O43306 1168 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 CHMP2AO43633 222 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 MED24O75448 989 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 NR1I2O75469 434 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 SLITRK3O94933 977 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 SPATA31C1P0DKV0 1188 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 SMPD1P17405 629 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 PTMSP20962 102 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 KCNJ6P48051 423 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 SIGLEC14Q08ET2 396 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 NEDD9Q14511 834 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 COL19A1Q14993 1142 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 EPHA7Q15375 998 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 PTPROQ16827 1216 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 TIGD5Q53EQ6 642 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 CELF3Q5SZQ8 465 aaKnown RBP10.57□□□□□ -0.72
TRIM28-208ENST00000597172 IQSEC1Q6DN90 963 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 NCAPH2Q6IBW4 605 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 CABP7Q86V35 215 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 BANK1Q8NDB2 785 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms