RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ZNF131P52739 623 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 MAPK7Q13164 816 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 EMC2Q15006 297 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 SFR1Q86XK3 245 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 FAM200AQ8TCP9 573 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 SLC7A3Q8WY07 619 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 HPS3Q969F9 1004 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 DRC1Q96MC2 740 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 CEP89Q96ST8 783 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 RNPEPQ9H4A4 650 aa16.24■□□□□ 0.19
VRK3-212ENST00000596814 MSCO60682 206 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 NKX3-2P78367 333 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 STK4Q13043 487 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 FAM102BQ5T8I3 360 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 DAW1Q8N136 415 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 KIAA0895Q8NCT3 520 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 RNF214Q8ND24 703 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 SH3TC2Q8TF17 1288 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 DHX33Q9H6R0 707 aaKnown RBP16.23■□□□□ 0.19
VRK3-212ENST00000596814 POLD4Q9HCU8 107 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 HMX1Q9NP08 348 aaPredicted RBP16.23■□□□□ 0.19
VRK3-212ENST00000596814 SLC39A2Q9NP94 309 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 SEL1LQ9UBV2 794 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 COL1A2P08123 1366 aa16.23■□□□□ 0.19
VRK3-212ENST00000596814 SFI1A8K8P3 1242 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 ZBTB42B2RXF5 422 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 ZEB2O60315 1214 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 KPNA6O60684 536 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 ADAMTS4O75173 837 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 CD44P16070 742 aaKnown RBP16.22■□□□□ 0.19
VRK3-212ENST00000596814 TBC1D8BQ0IIM8 1120 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 STIM1Q13586 685 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 ZNF484Q5JVG2 852 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 GNASQ5JWF2 1037 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 MYCT1Q8N699 235 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 KIFAP3Q92845 792 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 BPIFA3Q9BQP9 254 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 KATNAL1Q9BW62 490 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 RBSNQ9H1K0 784 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 GPRC5CQ9NQ84 441 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 XPNPEP1Q9NQW7 623 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 PDLIM7Q9NR12 457 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 OLFML3Q9NRN5 406 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 TBC1D7Q9P0N9 293 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 KAT6AQ92794 2004 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 GOLGA6L3A6NEY3 463 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 PPP1R3GB7ZBB8 358 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 PPP1R2P41236 205 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 PRCPP42785 496 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 PURAQ00577 322 aaKnown RBP16.22■□□□□ 0.19
VRK3-212ENST00000596814 COBLL1Q53SF7 1204 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 CT47A1Q5JQC4 288 aaPredicted RBP16.22■□□□□ 0.19
VRK3-212ENST00000596814 KLHL10Q6JEL2 608 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 EXOC8Q8IYI6 725 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 KAT2BQ92831 832 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 CBX8Q9HC52 389 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 LARSQ9P2J5 1176 aaKnown RBP16.22■□□□□ 0.19
VRK3-212ENST00000596814 PCDHA2Q9Y5H9 948 aa16.22■□□□□ 0.19
VRK3-212ENST00000596814 FSD2A1L4K1 749 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 GAS2O43903 313 aaKnown RBP16.21■□□□□ 0.19
VRK3-212ENST00000596814 MAFO75444 373 aaPredicted RBP16.21■□□□□ 0.19
VRK3-212ENST00000596814 HSPA1AP0DMV8 641 aaKnown RBP16.21■□□□□ 0.19
VRK3-212ENST00000596814 HSPA1BP0DMV9 641 aaKnown RBP16.21■□□□□ 0.19
VRK3-212ENST00000596814 PLS3P13797 630 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 INSRRP14616 1297 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 CST5P28325 142 aaPredicted RBP16.21■□□□□ 0.19
VRK3-212ENST00000596814 PSEN2P49810 448 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 PPFIA1Q13136 1202 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 MFSD10Q14728 455 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 KIAA0753Q2KHM9 967 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 SLC9C1Q4G0N8 1177 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 ODR4Q5SWX8 454 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 FAM178BQ8IXR5 827 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 ADSSL1Q8N142 457 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 TRAPPC12Q8WVT3 735 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 JPH2Q9BR39 696 aaPredicted RBP16.21■□□□□ 0.19
VRK3-212ENST00000596814 POLR3FQ9H1D9 316 aaPredicted RBP16.21■□□□□ 0.19
VRK3-212ENST00000596814 MRPL44Q9H9J2 332 aaKnown RBP16.21■□□□□ 0.19
VRK3-212ENST00000596814 MAPK8IP1Q9UQF2 711 aa16.21■□□□□ 0.19
VRK3-212ENST00000596814 ERCC5P28715 1186 aaPredicted RBP16.2■□□□□ 0.18
VRK3-212ENST00000596814 CTCFP49711 727 aaPredicted RBP16.2■□□□□ 0.18
VRK3-212ENST00000596814 SOX10P56693 466 aa16.2■□□□□ 0.18
VRK3-212ENST00000596814 IGBP1P78318 339 aa16.2■□□□□ 0.18
VRK3-212ENST00000596814 CTU1Q7Z7A3 348 aaKnown RBP16.2■□□□□ 0.18
VRK3-212ENST00000596814 AOPEPQ8N6M6 819 aa16.2■□□□□ 0.18
VRK3-212ENST00000596814 GLIS3Q8NEA6 775 aa16.2■□□□□ 0.18
VRK3-212ENST00000596814 KLHDC9Q8NEP7 349 aa16.2■□□□□ 0.18
VRK3-212ENST00000596814 FGFBP2Q9BYJ0 223 aa16.2■□□□□ 0.18
VRK3-212ENST00000596814 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.2■□□□□ 0.18
VRK3-212ENST00000596814 CTNND2Q9UQB3 1225 aa16.2■□□□□ 0.18
VRK3-212ENST00000596814 SCN10AQ9Y5Y9 1956 aa16.2■□□□□ 0.18
VRK3-212ENST00000596814 CENPFP49454 3210 aa16.19■□□□□ 0.18
VRK3-212ENST00000596814 HAS3O00219 553 aa16.19■□□□□ 0.18
VRK3-212ENST00000596814 PSMA7O14818 248 aa16.19■□□□□ 0.18
VRK3-212ENST00000596814 GCNT3O95395 438 aa16.19■□□□□ 0.18
VRK3-212ENST00000596814 RTP1P59025 263 aa16.19■□□□□ 0.18
VRK3-212ENST00000596814 CHMP4BP1P59074 171 aa16.19■□□□□ 0.18
VRK3-212ENST00000596814 PAK1Q13153 545 aa16.19■□□□□ 0.18
VRK3-212ENST00000596814 DMP1Q13316 513 aaPredicted RBP16.19■□□□□ 0.18
VRK3-212ENST00000596814 IQCB1Q15051 598 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms