RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 USP17L22D6RA61 530 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 USP17L17D6RBQ6 530 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 USP17L19D6RCP7 530 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 USP17L20D6RJB6 530 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 NR3C1P04150 777 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 RPA1P27694 616 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 GALCP54803 685 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 MAGOHP61326 146 aaKnown RBP16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 PSMC6P62333 389 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 USP17L24Q0WX57 530 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 BYSLQ13895 437 aaKnown RBP16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 USP17L6PQ6QN14 398 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 CRYGNQ8WXF5 182 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 MAGOHBQ96A72 148 aaKnown RBP16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 CENPTQ96BT3 561 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 ANO3Q9BYT9 981 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 DNM3Q9UQ16 869 aa16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 RTCBQ9Y3I0 505 aaKnown RBP16.16■□□□□ 0.18
SMARCA4-219ENST00000592604 SPATA31C1P0DKV0 1188 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 RFC4P35249 363 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 PPP2R5EQ16537 467 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 LACTB2Q53H82 288 aaPredicted RBP16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 DCAF17Q5H9S7 520 aaPredicted RBP16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 ETNPPLQ8TBG4 499 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 U2AF1L4Q8WU68 220 aaKnown RBP16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 P3H4Q92791 437 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 UIMC1Q96RL1 719 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 CELF4Q9BZC1 486 aaKnown RBP16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 CNOT10Q9H9A5 744 aaKnown RBP16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 NCANO14594 1321 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 GOLGA6L7A0A1B0GV03 622 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 TBX3O15119 743 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 PPATQ06203 517 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 KRT71Q3SY84 523 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 CACNA2D3Q8IZS8 1091 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 ATP8B4Q8TF62 1192 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 GCNT4Q9P109 453 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 ASTN1O14525 1302 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 DCDC2CA8MYV0 355 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 DNM1LO00429 736 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 STAT1P42224 750 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 ANKRD20A8PQ5CZ79 823 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 TAX1BP1Q86VP1 789 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 AMIGO3Q86WK7 504 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 ERMNQ8TAM6 284 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 LNX1Q8TBB1 728 aaPredicted RBP16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 BORCS6Q96GS4 357 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 CCDC114Q96M63 670 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 PSMD1Q99460 953 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 RAB17Q9H0T7 212 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 GGA1Q9UJY5 639 aa16.15■□□□□ 0.18
SMARCA4-219ENST00000592604 GREB1LQ9C091 1923 aaPredicted RBP16.14■□□□□ 0.18
SMARCA4-219ENST00000592604 DDX3YO15523 660 aaKnown RBP16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 FGGP02679 453 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 MAP2K2P36507 400 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 CASP4P49662 377 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 PTENP60484 403 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 PABPC4Q13310 644 aaKnown RBP eCLIP16.14■□□□□ 0.173e-7■■■□□ 14.6
SMARCA4-219ENST00000592604 TCERG1LQ5VWI1 586 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 KCTD1Q719H9 257 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 ZKSCAN4Q969J2 545 aaPredicted RBP16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 TACO1Q9BSH4 297 aaKnown RBP16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 SERPINB13Q9UIV8 391 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 STK24Q9Y6E0 443 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 BUB1BO60566 1050 aaPredicted RBP16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 TMEM253P0C7T8 217 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 MAP2K1Q02750 393 aaPredicted RBP16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 PICALMQ13492 652 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 GJB7Q6PEY0 223 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 RFFLQ8WZ73 363 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 FMO2Q99518 471 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 DPH5Q9H2P9 285 aa16.14■□□□□ 0.17
SMARCA4-219ENST00000592604 LMNB1P20700 586 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 DRD4P21917 467 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 SHMT1P34896 483 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 AP3B2Q13367 1082 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 QRICH1Q2TAL8 776 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 Q4G0T1 1027 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 ERMARDQ5T6L9 678 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 GKAP1Q5VSY0 366 aaPredicted RBP16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 DUPD1Q68J44 220 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 SLC35G2Q8TBE7 412 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 JPH2Q9BR39 696 aaPredicted RBP16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 SYT11Q9BT88 431 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 NR2E1Q9Y466 385 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 EVI5O60447 810 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 NUDT17P0C025 328 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 CDR1P51861 262 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 PLS1Q14651 629 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 SPRED3Q2MJR0 410 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 FUKQ8N0W3 1084 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 CARD9Q9H257 536 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 LRRC4CQ9HCJ2 640 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 OSGEPQ9NPF4 335 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 DDX4Q9NQI0 724 aaKnown RBP16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 ZDHHC18Q9NUE0 388 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 PCDHA1Q9Y5I3 950 aa16.13■□□□□ 0.17
SMARCA4-219ENST00000592604 MEIS2O14770 477 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 SOX5P35711 763 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 DCAF12L1Q5VU92 463 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms