RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 KCNT2Q6UVM3 1135 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 LRRC55Q6ZSA7 311 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 CMTR1Q8N1G2 835 aaKnown RBP12.61□□□□□ -0.39
VPS4B-202ENST00000588059 CYP2W1Q8TAV3 490 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 NKD2Q969F2 451 aaPredicted RBP12.61□□□□□ -0.39
VPS4B-202ENST00000588059 ZNF558Q96NG5 402 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 PPP1R16BQ96T49 567 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 LZTS2Q9BRK4 669 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 TMEM117Q9H0C3 514 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 ADAM7Q9H2U9 754 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 CACNA1AO00555 2505 aa12.61□□□□□ -0.39
VPS4B-202ENST00000588059 COL1A2P08123 1366 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 hCG_1642624A0A1W2PR95 340 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 ZBTB42B2RXF5 422 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 HBP1O60381 514 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 CCNE2O96020 404 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 WEE2P0C1S8 567 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 ARP10275 920 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 ITIH3Q06033 890 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 KIZQ2M2Z5 673 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 CWF19L1Q69YN2 538 aaKnown RBP12.6□□□□□ -0.39
VPS4B-202ENST00000588059 MCTP2Q6DN12 878 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 CES5AQ6NT32 575 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 TMC7Q7Z402 723 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 LRRC43Q8N309 656 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 CASD1Q96PB1 797 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 OSMRQ99650 979 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 WDR81Q562E7 1941 aa12.6□□□□□ -0.39
VPS4B-202ENST00000588059 C2orf71A6NGG8 1288 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 CLASP2O75122 1294 aaKnown RBP12.59□□□□□ -0.39
VPS4B-202ENST00000588059 C22orf31O95567 290 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 RXRAP19793 462 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 MTHFRP42898 656 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 ID4P47928 161 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 GNAQP50148 359 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 CLCN5P51795 746 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 CRYBB1P53674 252 aaPredicted RBP12.59□□□□□ -0.39
VPS4B-202ENST00000588059 KRT17Q04695 432 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 SMC1AQ14683 1233 aaKnown RBP12.59□□□□□ -0.39
VPS4B-202ENST00000588059 CCDC60Q8IWA6 550 aaPredicted RBP12.59□□□□□ -0.39
VPS4B-202ENST00000588059 ZDHHC14Q8IZN3 488 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 ADSSL1Q8N142 457 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 MRPL43Q8N983 215 aaKnown RBP12.59□□□□□ -0.39
VPS4B-202ENST00000588059 TDRD5Q8NAT2 981 aaKnown RBP12.59□□□□□ -0.39
VPS4B-202ENST00000588059 MFSD1Q9H3U5 465 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 AGO4Q9HCK5 861 aaKnown RBP12.59□□□□□ -0.39
VPS4B-202ENST00000588059 SPG21Q9NZD8 308 aa12.59□□□□□ -0.39
VPS4B-202ENST00000588059 BACH1O14867 736 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 HOXA2O43364 376 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 GPR32O75388 356 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 VTNP04004 478 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 GSPT1P15170 499 aaKnown RBP12.58□□□□□ -0.4
VPS4B-202ENST00000588059 CEP55Q53EZ4 464 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 ZNF484Q5JVG2 852 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 CLLU1OSQ5K130 101 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 RARS2Q5T160 578 aaKnown RBP12.58□□□□□ -0.4
VPS4B-202ENST00000588059 FAM160B1Q5W0V3 765 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 KIAA1841Q6NSI8 718 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 ABHD15Q6UXT9 468 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 HEATR3Q7Z4Q2 680 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 SLC39A11Q8N1S5 342 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 PGBD1Q96JS3 809 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 LIMD1Q9UGP4 676 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 C2orf16Q68DN1 1984 aa12.58□□□□□ -0.4
VPS4B-202ENST00000588059 DDX39AO00148 427 aaKnown RBP12.57□□□□□ -0.4
VPS4B-202ENST00000588059 SH2B2O14492 632 aaPredicted RBP12.57□□□□□ -0.4
VPS4B-202ENST00000588059 PRC1O43663 620 aa12.57□□□□□ -0.4
VPS4B-202ENST00000588059 ATP4AP20648 1035 aa12.57□□□□□ -0.4
VPS4B-202ENST00000588059 KANK3Q6NY19 840 aa12.57□□□□□ -0.4
VPS4B-202ENST00000588059 PDXDC2PQ6P474 469 aa12.57□□□□□ -0.4
VPS4B-202ENST00000588059 ECHDC2Q86YB7 292 aa12.57□□□□□ -0.4
VPS4B-202ENST00000588059 ABI1Q8IZP0 508 aa12.57□□□□□ -0.4
VPS4B-202ENST00000588059 C12orf76Q8N812 135 aaPredicted RBP12.57□□□□□ -0.4
VPS4B-202ENST00000588059 FEZF2Q8TBJ5 459 aa12.57□□□□□ -0.4
VPS4B-202ENST00000588059 MTA3Q9BTC8 594 aa12.57□□□□□ -0.4
VPS4B-202ENST00000588059 USTQ9Y2C2 406 aa12.57□□□□□ -0.4
VPS4B-202ENST00000588059 MEIS1O00470 390 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 EOMESO95936 686 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 AOC1P19801 751 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 CHMLP26374 656 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 COL9A3Q14050 684 aaPredicted RBP12.56□□□□□ -0.4
VPS4B-202ENST00000588059 TTC22Q5TAA0 569 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 WWC2Q6AWC2 1192 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 TYW1BQ6NUM6 668 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 CASC1Q6TDU7 716 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 NFXL1Q6ZNB6 911 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 TMTC3Q6ZXV5 915 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 RAB11FIP4Q86YS3 637 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 CCDC105Q8IYK2 499 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 PLCD3Q8N3E9 789 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 CCDC82Q8N4S0 544 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 FLCNQ8NFG4 579 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 RUFY2Q8WXA3 655 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 ANO3Q9BYT9 981 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 ZNF302Q9NR11 478 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 DZANK1Q9NVP4 752 aa12.56□□□□□ -0.4
VPS4B-202ENST00000588059 DBR1Q9UK59 544 aaKnown RBP12.56□□□□□ -0.4
VPS4B-202ENST00000588059 EP300Q09472 2414 aaPredicted RBP12.56□□□□□ -0.4
VPS4B-202ENST00000588059 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.55□□□□□ -0.4
VPS4B-202ENST00000588059 CCDC69A6NI79 296 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms