RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 NIFKQ9BYG3 293 aaKnown RBP16.37■□□□□ 0.21
SMARCE1-216ENST00000580419 PDRG1Q9NUG6 133 aa16.37■□□□□ 0.21
SMARCE1-216ENST00000580419 GABBR1Q9UBS5 961 aa16.37■□□□□ 0.21
SMARCE1-216ENST00000580419 PPME1Q9Y570 386 aa16.37■□□□□ 0.21
SMARCE1-216ENST00000580419 KIAA1671Q9BY89 1806 aa16.37■□□□□ 0.21
SMARCE1-216ENST00000580419 ZNF862O60290 1169 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 OATP04181 439 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 LRCH2Q5VUJ6 765 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 ETNPPLQ8TBG4 499 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 RASGRP4Q8TDF6 673 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 PPP2R3CQ969Q6 453 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 ZBTB10Q96DT7 871 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 FAM20AQ96MK3 541 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 MAP7D2Q96T17 732 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 TMEM161AQ9NX61 479 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 PPP4R2Q9NY27 417 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 PRKAG3Q9UGI9 489 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 ST3GAL5Q9UNP4 418 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 PLAGL2Q9UPG8 496 aa16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 NOC2LQ9Y3T9 749 aaKnown RBP16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 ARIH1Q9Y4X5 557 aaPredicted RBP16.36■□□□□ 0.21
SMARCE1-216ENST00000580419 CARNS1A5YM72 827 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 GRXCR2A6NFK2 248 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 TBX3O15119 743 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 HOXA2O43364 376 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 PFKFB2O60825 505 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 EIF4BP23588 611 aaKnown RBP16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 DSC3Q14574 896 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 NONOQ15233 471 aaKnown RBP eCLIP16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 XKR3Q5GH77 459 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 PDE12Q6L8Q7 609 aaKnown RBP16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 FAM178BQ8IXR5 827 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 TMEM40Q8WWA1 233 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 PHF20Q9BVI0 1012 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 TRAIPQ9BWF2 469 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 UPF3BQ9BZI7 483 aaKnown RBP16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 ADAMTS10Q9H324 1103 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 SAMM50Q9Y512 469 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 PCDHB7Q9Y5E2 793 aa16.35■□□□□ 0.21
SMARCE1-216ENST00000580419 IGKV6-21A0A0C4DH24 114 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 DENND3A2RUS2 1198 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 DKC1O60832 514 aaKnown RBP eCLIP16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 TMEM62Q0P6H9 643 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 TCEAL5Q5H9L2 206 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 EFCAB12Q6NXP0 572 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 EXOC8Q8IYI6 725 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 WASF1Q92558 559 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 ADAM2Q99965 735 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 JPH2Q9BR39 696 aaPredicted RBP16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 CDHR5Q9HBB8 845 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 AAASQ9NRG9 546 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 LRFN2Q9ULH4 789 aa16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 MRPL42Q9Y6G3 142 aaKnown RBP16.34■□□□□ 0.21
SMARCE1-216ENST00000580419 GRM6O15303 877 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 KCNA5P22460 613 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 PRKCEQ02156 737 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 NFX1Q12986 1120 aaKnown RBP16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 PPP2R5CQ13362 524 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 CAMK1Q14012 370 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 KIZQ2M2Z5 673 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 FAM228AQ86W67 206 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 METTL13Q8N6R0 699 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 SPPL3Q8TCT6 385 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 CEP89Q96ST8 783 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 SLKQ9H2G2 1235 aaPredicted RBP16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 UNC45AQ9H3U1 944 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 KCNMB3Q9NPA1 279 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 CHST12Q9NRB3 414 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 LZTS1Q9Y250 596 aa16.33■□□□□ 0.2
SMARCE1-216ENST00000580419 MGEA5O60502 916 aa16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 STBD1O95210 358 aa16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 EOMESO95936 686 aa16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 GPC3P51654 580 aa16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 TBC1D8BQ0IIM8 1120 aa16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 SCRN1Q12765 414 aa16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 PTCRAQ6ISU1 281 aaPredicted RBP16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 ZNF410Q86VK4 478 aa16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 C5orf42Q9H799 3197 aa16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 DACT1Q9NYF0 836 aa16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 DDX25Q9UHL0 483 aaKnown RBP16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 PCDHB12Q9Y5F1 795 aa16.32■□□□□ 0.2
SMARCE1-216ENST00000580419 PI4K2BG5E9Z4 385 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 ITGB1P05556 798 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 DARSP14868 501 aaKnown RBP16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 LTBRP36941 435 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 DNM2P50570 870 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 NLRP11P59045 1033 aaKnown RBP16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 PSMC5P62195 406 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 TMEM266Q2M3C6 531 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 MIER3Q7Z3K6 550 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 NEK8Q86SG6 692 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 NECAB3Q96P71 396 aaPredicted RBP16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 OSMRQ99650 979 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 INO80BQ9C086 356 aaPredicted RBP16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 TMEM117Q9H0C3 514 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 ATP6V0A4Q9HBG4 840 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 TRIOO75962 3097 aa16.31■□□□□ 0.2
SMARCE1-216ENST00000580419 A0A0U1RQF3 1178 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 CCDC194A0A1B0GVG4 234 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms