RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TMX3Q96JJ7 454 aa26.82■■□□□ 1.88
SHMT1-206ENST00000579558 OSMRQ99650 979 aa26.82■■□□□ 1.88
SHMT1-206ENST00000579558 FOXP1Q9H334 677 aaPredicted RBP26.82■■□□□ 1.88
SHMT1-206ENST00000579558 NOC2LQ9Y3T9 749 aaKnown RBP26.82■■□□□ 1.88
SHMT1-206ENST00000579558 DLL1O00548 723 aa26.81■■□□□ 1.88
SHMT1-206ENST00000579558 GPR32O75388 356 aa26.81■■□□□ 1.88
SHMT1-206ENST00000579558 RPS6KA5O75582 802 aa26.81■■□□□ 1.88
SHMT1-206ENST00000579558 CD2BP2O95400 341 aaKnown RBP26.81■■□□□ 1.88
SHMT1-206ENST00000579558 SPIRE1Q08AE8 756 aa26.81■■□□□ 1.88
SHMT1-206ENST00000579558 SP7Q8TDD2 431 aaPredicted RBP26.81■■□□□ 1.88
SHMT1-206ENST00000579558 TGS1Q96RS0 853 aaKnown RBP26.81■■□□□ 1.88
SHMT1-206ENST00000579558 SH2D3AQ9BRG2 576 aa26.81■■□□□ 1.88
SHMT1-206ENST00000579558 ERVK-5Q9HDB9 667 aa26.81■■□□□ 1.88
SHMT1-206ENST00000579558 CUL9Q8IWT3 2517 aa26.81■■□□□ 1.88
SHMT1-206ENST00000579558 MCM2P49736 904 aa26.8■■□□□ 1.88
SHMT1-206ENST00000579558 NLRP11P59045 1033 aaKnown RBP26.8■■□□□ 1.88
SHMT1-206ENST00000579558 ODR4Q5SWX8 454 aa26.8■■□□□ 1.88
SHMT1-206ENST00000579558 ANO5Q75V66 913 aa26.8■■□□□ 1.88
SHMT1-206ENST00000579558 MTUS1Q9ULD2 1270 aa26.8■■□□□ 1.88
SHMT1-206ENST00000579558 PCDHA12Q9UN75 941 aa26.8■■□□□ 1.88
SHMT1-206ENST00000579558 EYSQ5T1H1 3165 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 MCM7P33993 719 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 TXKP42681 527 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 ERVK-21P61565 698 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 PLA2G4FQ68DD2 849 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 RTN4RL1Q86UN2 441 aaPredicted RBP26.79■■□□□ 1.88
SHMT1-206ENST00000579558 ZNF710Q8N1W2 664 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 PPM1EQ8WY54 764 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 DYDC2Q96IM9 177 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 CEP89Q96ST8 783 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 LXNQ9BS40 222 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 TSPYL2Q9H2G4 693 aaPredicted RBP26.79■■□□□ 1.88
SHMT1-206ENST00000579558 TMX1Q9H3N1 280 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 TTC12Q9H892 705 aaPredicted RBP26.79■■□□□ 1.88
SHMT1-206ENST00000579558 RGL1Q9NZL6 768 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 WRAP73Q9P2S5 460 aaPredicted RBP26.79■■□□□ 1.88
SHMT1-206ENST00000579558 KIF3AQ9Y496 699 aa26.79■■□□□ 1.88
SHMT1-206ENST00000579558 TTC3P53804 2025 aa26.78■■□□□ 1.88
SHMT1-206ENST00000579558 GPR182O15218 404 aa26.78■■□□□ 1.88
SHMT1-206ENST00000579558 NOSTRINQ8IVI9 506 aa26.78■■□□□ 1.88
SHMT1-206ENST00000579558 MTMR9Q96QG7 549 aa26.78■■□□□ 1.88
SHMT1-206ENST00000579558 ADAMTS10Q9H324 1103 aa26.78■■□□□ 1.88
SHMT1-206ENST00000579558 ST3GAL5Q9UNP4 418 aa26.78■■□□□ 1.88
SHMT1-206ENST00000579558 COL4A4P53420 1690 aaPredicted RBP26.78■■□□□ 1.88
SHMT1-206ENST00000579558 COL4A6Q14031 1691 aa26.77■■□□□ 1.88
SHMT1-206ENST00000579558 GTPBP6O43824 516 aaPredicted RBP26.77■■□□□ 1.88
SHMT1-206ENST00000579558 CYP4A11Q02928 519 aa26.77■■□□□ 1.88
SHMT1-206ENST00000579558 CTTNQ14247 550 aaKnown RBP26.77■■□□□ 1.88
SHMT1-206ENST00000579558 FAM228AQ86W67 206 aa26.77■■□□□ 1.88
SHMT1-206ENST00000579558 C4orf19Q8IY42 314 aa26.77■■□□□ 1.88
SHMT1-206ENST00000579558 ZNF668Q96K58 619 aaPredicted RBP26.77■■□□□ 1.88
SHMT1-206ENST00000579558 SCLT1Q96NL6 688 aa26.77■■□□□ 1.88
SHMT1-206ENST00000579558 TMEM60Q9H2L4 133 aa26.77■■□□□ 1.88
SHMT1-206ENST00000579558 CYP26B1Q9NR63 512 aa26.77■■□□□ 1.88
SHMT1-206ENST00000579558 IGKV6-21A0A0C4DH24 114 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 DNM2P50570 870 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 GPC3P51654 580 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 NPEPPSP55786 919 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 GRB10Q13322 594 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 DRP2Q13474 957 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 CCDC85BQ15834 202 aaPredicted RBP26.76■■□□□ 1.87
SHMT1-206ENST00000579558 FAM43BQ6ZT52 329 aaPredicted RBP26.76■■□□□ 1.87
SHMT1-206ENST00000579558 PHF6Q8IWS0 365 aaKnown RBP eCLIP26.76■■□□□ 1.87
SHMT1-206ENST00000579558 MICALL1Q8N3F8 863 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 GDPD5Q8WTR4 605 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 CEP170P1Q96L14 293 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 EIF2AK1Q9BQI3 630 aaKnown RBP26.76■■□□□ 1.87
SHMT1-206ENST00000579558 JPH2Q9BR39 696 aaPredicted RBP26.76■■□□□ 1.87
SHMT1-206ENST00000579558 C17orf80Q9BSJ5 609 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 ZSWIM4Q9H7M6 989 aa26.76■■□□□ 1.87
SHMT1-206ENST00000579558 MAFO75444 373 aaPredicted RBP26.75■■□□□ 1.87
SHMT1-206ENST00000579558 ZNF174Q15697 407 aa26.75■■□□□ 1.87
SHMT1-206ENST00000579558 NPAS4Q8IUM7 802 aa26.75■■□□□ 1.87
SHMT1-206ENST00000579558 TPH2Q8IWU9 490 aa26.75■■□□□ 1.87
SHMT1-206ENST00000579558 NLRP7Q8WX94 980 aa26.75■■□□□ 1.87
SHMT1-206ENST00000579558 NOL7Q9UMY1 257 aaKnown RBP26.75■■□□□ 1.87
SHMT1-206ENST00000579558 MTCH2Q9Y6C9 303 aa26.75■■□□□ 1.87
SHMT1-206ENST00000579558 ADGRA3Q8IWK6 1321 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 DENND3A2RUS2 1198 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 MGEA5O60502 916 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 STAG3L1P0CL83 205 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 POU3F3P20264 500 aaPredicted RBP26.74■■□□□ 1.87
SHMT1-206ENST00000579558 YWHABP31946 246 aaKnown RBP26.74■■□□□ 1.87
SHMT1-206ENST00000579558 ORC2Q13416 577 aaPredicted RBP26.74■■□□□ 1.87
SHMT1-206ENST00000579558 TTC38Q5R3I4 469 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 OTUD6AQ7L8S5 288 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 FBXO22Q8NEZ5 403 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 NEK9Q8TD19 979 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 SAMD11Q96NU1 681 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 ADAM2Q99965 735 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 BACH2Q9BYV9 841 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 SUCLA2Q9P2R7 463 aaPredicted RBP26.74■■□□□ 1.87
SHMT1-206ENST00000579558 PPME1Q9Y570 386 aa26.74■■□□□ 1.87
SHMT1-206ENST00000579558 LPXNO60711 386 aa26.73■■□□□ 1.87
SHMT1-206ENST00000579558 SLITRK3O94933 977 aa26.73■■□□□ 1.87
SHMT1-206ENST00000579558 IBSPP21815 317 aaPredicted RBP26.73■■□□□ 1.87
SHMT1-206ENST00000579558 EIF4BP23588 611 aaKnown RBP26.73■■□□□ 1.87
SHMT1-206ENST00000579558 U2AF2P26368 475 aaKnown RBP eCLIP26.73■■□□□ 1.878e-8■■■■■ 27.5
SHMT1-206ENST00000579558 TRAPPC10P48553 1259 aa26.73■■□□□ 1.87
SHMT1-206ENST00000579558 FIBCD1Q8N539 461 aa26.73■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms