RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PCDHA12Q9UN75 941 aa16.66■□□□□ 0.26
SS18-212ENST00000579061 PRRC2BQ5JSZ5 2229 aaKnown RBP16.65■□□□□ 0.26
SS18-212ENST00000579061 IGKV6-21A0A0C4DH24 114 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 DDX11L8A8MPP1 907 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 RBAK-RBAKDNI3L0D1 243 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 GPR182O15218 404 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 UPP2O95045 317 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 VTNP04004 478 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 IGFBP4P22692 258 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 KIZQ2M2Z5 673 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 MTERF2Q49AM1 385 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 ANO5Q75V66 913 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 RTN4RL1Q86UN2 441 aaPredicted RBP16.65■□□□□ 0.26
SS18-212ENST00000579061 C4orf19Q8IY42 314 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 EXOC8Q8IYI6 725 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 LRRC71Q8N4P6 559 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 LINC01599Q8WXQ3 324 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 MTMR9Q96QG7 549 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 CERS4Q9HA82 394 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 ERVK-5Q9HDB9 667 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 AKT3Q9Y243 479 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 GINS2Q9Y248 185 aa16.65■□□□□ 0.26
SS18-212ENST00000579061 NOC2LQ9Y3T9 749 aaKnown RBP16.65■□□□□ 0.26
SS18-212ENST00000579061 EPOPA6NHQ4 379 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 GTPBP6O43824 516 aaPredicted RBP16.64■□□□□ 0.25
SS18-212ENST00000579061 MAFO75444 373 aaPredicted RBP16.64■□□□□ 0.25
SS18-212ENST00000579061 DNM2P50570 870 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 NLRP11P59045 1033 aaKnown RBP16.64■□□□□ 0.25
SS18-212ENST00000579061 NFX1Q12986 1120 aaKnown RBP16.64■□□□□ 0.25
SS18-212ENST00000579061 NCAPH2Q6IBW4 605 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 CRIPAKQ8N1N5 446 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 NEK9Q8TD19 979 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 TMEM40Q8WWA1 233 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 TMX3Q96JJ7 454 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 OSMRQ99650 979 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 ADAMTS10Q9H324 1103 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 TMX1Q9H3N1 280 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 ZSWIM4Q9H7M6 989 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 TTC12Q9H892 705 aaPredicted RBP16.64■□□□□ 0.25
SS18-212ENST00000579061 SUGCTQ9HAC7 445 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 RC3H2Q9HBD1 1191 aaKnown RBP16.64■□□□□ 0.25
SS18-212ENST00000579061 RNF216Q9NWF9 866 aaPredicted RBP16.64■□□□□ 0.25
SS18-212ENST00000579061 LMCD1Q9NZU5 365 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 ST3GAL5Q9UNP4 418 aa16.64■□□□□ 0.25
SS18-212ENST00000579061 COL4A4P53420 1690 aaPredicted RBP16.63■□□□□ 0.25
SS18-212ENST00000579061 WNT7AO00755 349 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 STAG3L1P0CL83 205 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 EIF4BP23588 611 aaKnown RBP16.63■□□□□ 0.25
SS18-212ENST00000579061 TRAPPC10P48553 1259 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 TMEM266Q2M3C6 531 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 OTUD6AQ7L8S5 288 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 NPAS4Q8IUM7 802 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 NOSTRINQ8IVI9 506 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 ZNF689Q96CS4 500 aaPredicted RBP16.63■□□□□ 0.25
SS18-212ENST00000579061 LXNQ9BS40 222 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 CYP26B1Q9NR63 512 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 C1orf112Q9NSG2 853 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 ARID2Q68CP9 1835 aa16.63■□□□□ 0.25
SS18-212ENST00000579061 TMEM150BA6NC51 233 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 RFXAPO00287 272 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 LPXNO60711 386 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 LYPLA2O95372 231 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 CD2BP2O95400 341 aaKnown RBP16.62■□□□□ 0.25
SS18-212ENST00000579061 U2AF2P26368 475 aaKnown RBP eCLIP16.62■□□□□ 0.251e-7■■■□□ 18
SS18-212ENST00000579061 TXKP42681 527 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 GPC3P51654 580 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 GRB10Q13322 594 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 GNL2Q13823 731 aaKnown RBP16.62■□□□□ 0.25
SS18-212ENST00000579061 SPRED2Q7Z698 418 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 FAM228AQ86W67 206 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.62■□□□□ 0.25
SS18-212ENST00000579061 DYDC2Q96IM9 177 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 HSD17B14Q9BPX1 270 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 EIF2AK1Q9BQI3 630 aaKnown RBP16.62■□□□□ 0.25
SS18-212ENST00000579061 TMEM60Q9H2L4 133 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 RGS18Q9NS28 235 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 RGL1Q9NZL6 768 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 WRAP73Q9P2S5 460 aaPredicted RBP16.62■□□□□ 0.25
SS18-212ENST00000579061 MTCH2Q9Y6C9 303 aa16.62■□□□□ 0.25
SS18-212ENST00000579061 A0A0C4DFX4 3053 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 GAS2O43903 313 aaKnown RBP16.61■□□□□ 0.25
SS18-212ENST00000579061 DGKIO75912 1065 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 SLITRK3O94933 977 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 YWHABP31946 246 aaKnown RBP16.61■□□□□ 0.25
SS18-212ENST00000579061 MCM7P33993 719 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 RFC5P40937 340 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 SARSP49591 514 aaKnown RBP16.61■□□□□ 0.25
SS18-212ENST00000579061 ZNF410Q86VK4 478 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 FIBCD1Q8N539 461 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 FBXO22Q8NEZ5 403 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 CEP170P1Q96L14 293 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 PPP1R16BQ96T49 567 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 ADAM2Q99965 735 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 BACH2Q9BYV9 841 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 DHX33Q9H6R0 707 aaKnown RBP16.61■□□□□ 0.25
SS18-212ENST00000579061 NOL7Q9UMY1 257 aaKnown RBP16.61■□□□□ 0.25
SS18-212ENST00000579061 RWDD3Q9Y3V2 267 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 ADGRA3Q8IWK6 1321 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 UNC80Q8N2C7 3258 aa16.61■□□□□ 0.25
SS18-212ENST00000579061 DENND3A2RUS2 1198 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms