RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 SHC4Q6S5L8 630 aa11.39□□□□□ -0.59
SS18-207ENST00000577636 RBM43Q6ZSC3 357 aaKnown RBP11.39□□□□□ -0.59
SS18-207ENST00000577636 CNNM3Q8NE01 707 aa11.39□□□□□ -0.59
SS18-207ENST00000577636 RASGRP4Q8TDF6 673 aa11.39□□□□□ -0.59
SS18-207ENST00000577636 TOP1MTQ969P6 601 aa11.39□□□□□ -0.59
SS18-207ENST00000577636 EMID1Q96A84 441 aaPredicted RBP11.39□□□□□ -0.59
SS18-207ENST00000577636 PABPC5Q96DU9 382 aaKnown RBP11.39□□□□□ -0.59
SS18-207ENST00000577636 CLIC6Q96NY7 704 aa11.39□□□□□ -0.59
SS18-207ENST00000577636 CSRNP2Q9H175 543 aa11.39□□□□□ -0.59
SS18-207ENST00000577636 USP25Q9UHP3 1055 aa11.39□□□□□ -0.59
SS18-207ENST00000577636 POTEB3A0JP26 581 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 VWA3AA6NCI4 1184 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 SPDYE3A6NKU9 549 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 MARCH6O60337 910 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 NEMFO60524 1076 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 FOSP01100 380 aaPredicted RBP11.38□□□□□ -0.59
SS18-207ENST00000577636 SMIM10L2AP0DMW4 78 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 SMIM10L2BP0DMW5 78 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 GCFC2P16383 781 aaKnown RBP11.38□□□□□ -0.59
SS18-207ENST00000577636 HOXA13P31271 388 aaPredicted RBP11.38□□□□□ -0.59
SS18-207ENST00000577636 CTNNB1P35222 781 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 PRPHP41219 470 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 SP2Q02086 613 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 ZP2Q05996 745 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 AP3B2Q13367 1082 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 TMEM266Q2M3C6 531 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 LETM2Q2VYF4 491 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 POTEBQ6S5H4 581 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 HFE2Q6ZVN8 426 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 RPAINQ86UA6 219 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 SERINC5Q86VE9 423 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 FCHSD1Q86WN1 690 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 ADHFE1Q8IWW8 467 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 CEP57L1Q8IYX8 460 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 FIBCD1Q8N539 461 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 RNF214Q8ND24 703 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 RASSF8Q8NHQ8 419 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 SP7Q8TDD2 431 aaPredicted RBP11.38□□□□□ -0.59
SS18-207ENST00000577636 TBCKQ8TEA7 893 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 IFIH1Q9BYX4 1025 aaKnown RBP11.38□□□□□ -0.59
SS18-207ENST00000577636 RAB34Q9BZG1 259 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 RBSNQ9H1K0 784 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 RNPEPQ9H4A4 650 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 EHMT1Q9H9B1 1298 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 ANO10Q9NW15 660 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 HPSEQ9Y251 543 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 TRANK1O15050 2925 aa11.38□□□□□ -0.59
SS18-207ENST00000577636 BRWD1Q9NSI6 2320 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 MYH6P13533 1939 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.37□□□□□ -0.59
SS18-207ENST00000577636 H3BRB1 525 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 NOP56O00567 594 aaKnown RBP11.37□□□□□ -0.59
SS18-207ENST00000577636 RGS20O76081 388 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 OR52Z1P0C646 297 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 IRS1P35568 1242 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 UTP14CQ5TAP6 766 aaKnown RBP11.37□□□□□ -0.59
SS18-207ENST00000577636 KRBA2Q6ZNG9 492 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 ELOA2Q8IYF1 753 aaPredicted RBP11.37□□□□□ -0.59
SS18-207ENST00000577636 FAM200AQ8TCP9 573 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 AK8Q96MA6 479 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 PDCD2LQ9BRP1 358 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 C16orf70Q9BSU1 422 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 MAF1Q9H063 256 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 TUT1Q9H6E5 874 aaKnown RBP11.37□□□□□ -0.59
SS18-207ENST00000577636 BCAS3Q9H6U6 928 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 SETD4Q9NVD3 440 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 CCDC39Q9UFE4 941 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 MUTYHQ9UIF7 546 aa11.37□□□□□ -0.59
SS18-207ENST00000577636 MUC6Q6W4X9 2439 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 GOLGA6L19H0YKK7 550 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 GRM6O15303 877 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 POLR2DO15514 142 aaKnown RBP11.36□□□□□ -0.59
SS18-207ENST00000577636 PPP1R11O60927 126 aaPredicted RBP11.36□□□□□ -0.59
SS18-207ENST00000577636 SMC2O95347 1197 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 LGALS2P05162 132 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 UBA1P22314 1058 aaKnown RBP11.36□□□□□ -0.59
SS18-207ENST00000577636 CCND2P30279 289 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 GTF2F1P35269 517 aaKnown RBP eCLIP11.36□□□□□ -0.59
SS18-207ENST00000577636 UBA7P41226 1012 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 TPM4P67936 248 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 SP4Q02446 784 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 DLX2Q07687 328 aaPredicted RBP11.36□□□□□ -0.59
SS18-207ENST00000577636 PGM5Q15124 567 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 KCNV1Q6PIU1 500 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 IQUBQ8NA54 791 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 IL31RAQ8NI17 732 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 MFSD14AQ96MC6 490 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 TMEM260Q9NX78 707 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 KIAA1468Q9P260 1216 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 PRKAG3Q9UGI9 489 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 TCHHQ07283 1943 aa11.36□□□□□ -0.59
SS18-207ENST00000577636 SIP14410 1827 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 C19orf67A6NJJ6 358 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 OPLAHO14841 1288 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 GNAT1P11488 350 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 LTBRP36941 435 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 HSD17B4P51659 736 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 USP11P51784 963 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 ARHGAP4P98171 946 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 CCDC173Q0VFZ6 552 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms