RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 SLFN12Q8IYM2 578 aa17.43■□□□□ 0.38
SF3B3-215ENST00000577085 BANK1Q8NDB2 785 aa17.43■□□□□ 0.38
SF3B3-215ENST00000577085 ASB2Q96Q27 587 aa17.43■□□□□ 0.38
SF3B3-215ENST00000577085 ST3GAL5Q9UNP4 418 aa17.43■□□□□ 0.38
SF3B3-215ENST00000577085 NOC2LQ9Y3T9 749 aaKnown RBP17.43■□□□□ 0.38
SF3B3-215ENST00000577085 PCDHB7Q9Y5E2 793 aa17.43■□□□□ 0.38
SF3B3-215ENST00000577085 MYO9BQ13459 2157 aa17.43■□□□□ 0.38
SF3B3-215ENST00000577085 COL4A4P53420 1690 aaPredicted RBP17.42■□□□□ 0.38
SF3B3-215ENST00000577085 TBX3O15119 743 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 MMP1P03956 469 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 PPP2R5CQ13362 524 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 GPM6BQ13491 265 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 NLRP7Q8WX94 980 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 LINC01599Q8WXQ3 324 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 ADAM2Q99965 735 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 UPF2Q9HAU5 1272 aaKnown RBP17.42■□□□□ 0.38
SF3B3-215ENST00000577085 CDHR5Q9HBB8 845 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 ERVK-5Q9HDB9 667 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 KCNMB3Q9NPA1 279 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 C1orf112Q9NSG2 853 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 COG5Q9UP83 839 aa17.42■□□□□ 0.38
SF3B3-215ENST00000577085 GPR32O75388 356 aa17.41■□□□□ 0.38
SF3B3-215ENST00000577085 DGKIO75912 1065 aa17.41■□□□□ 0.38
SF3B3-215ENST00000577085 QARSP47897 775 aaKnown RBP17.41■□□□□ 0.38
SF3B3-215ENST00000577085 CDC42EP1Q00587 391 aa17.41■□□□□ 0.38
SF3B3-215ENST00000577085 NCAPH2Q6IBW4 605 aa17.41■□□□□ 0.38
SF3B3-215ENST00000577085 POTEDQ86YR6 584 aa17.41■□□□□ 0.38
SF3B3-215ENST00000577085 CCDC83Q8IWF9 413 aa17.41■□□□□ 0.38
SF3B3-215ENST00000577085 DIS3L2Q8IYB7 885 aaKnown RBP17.41■□□□□ 0.38
SF3B3-215ENST00000577085 TMEM40Q8WWA1 233 aa17.41■□□□□ 0.38
SF3B3-215ENST00000577085 HLA-CQ95604 372 aa17.41■□□□□ 0.38
SF3B3-215ENST00000577085 ZSCAN31Q96LW9 406 aaPredicted RBP17.41■□□□□ 0.38
SF3B3-215ENST00000577085 JPH2Q9BR39 696 aaPredicted RBP17.41■□□□□ 0.38
SF3B3-215ENST00000577085 C11orf84Q9BUA3 381 aaPredicted RBP17.41■□□□□ 0.38
SF3B3-215ENST00000577085 NIFKQ9BYG3 293 aaKnown RBP17.41■□□□□ 0.38
SF3B3-215ENST00000577085 TMX1Q9H3N1 280 aa17.41■□□□□ 0.38
SF3B3-215ENST00000577085 COL4A6Q14031 1691 aa17.4■□□□□ 0.38
SF3B3-215ENST00000577085 BTBD18B2RXH4 712 aa17.4■□□□□ 0.38
SF3B3-215ENST00000577085 H3BNC9 293 aa17.4■□□□□ 0.38
SF3B3-215ENST00000577085 ZSCAN20P17040 1043 aaPredicted RBP17.4■□□□□ 0.38
SF3B3-215ENST00000577085 SARSP49591 514 aaKnown RBP17.4■□□□□ 0.38
SF3B3-215ENST00000577085 GNL2Q13823 731 aaKnown RBP17.4■□□□□ 0.38
SF3B3-215ENST00000577085 C8orf34Q49A92 452 aa17.4■□□□□ 0.38
SF3B3-215ENST00000577085 PAN2Q504Q3 1202 aaKnown RBP17.4■□□□□ 0.38
SF3B3-215ENST00000577085 B3GNT9Q6UX72 402 aa17.4■□□□□ 0.38
SF3B3-215ENST00000577085 SLC24A5Q71RS6 500 aa17.4■□□□□ 0.38
SF3B3-215ENST00000577085 RTN4RL1Q86UN2 441 aaPredicted RBP17.4■□□□□ 0.38
SF3B3-215ENST00000577085 FAM184AQ8NB25 1140 aa17.4■□□□□ 0.38
SF3B3-215ENST00000577085 MRPL38Q96DV4 380 aaKnown RBP17.4■□□□□ 0.38
SF3B3-215ENST00000577085 C8orf76Q96K31 380 aa17.4■□□□□ 0.38
SF3B3-215ENST00000577085 LLPHQ9BRT6 129 aaKnown RBP17.4■□□□□ 0.38
SF3B3-215ENST00000577085 VAV3Q9UKW4 847 aa17.4■□□□□ 0.38
SF3B3-215ENST00000577085 FAM205CA6NFA0 338 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 RB1P06400 928 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 P4HBP07237 508 aaKnown RBP17.39■□□□□ 0.37
SF3B3-215ENST00000577085 EIF4BP23588 611 aaKnown RBP17.39■□□□□ 0.37
SF3B3-215ENST00000577085 BMPR1AP36894 532 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 TFF2Q03403 129 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 CALCRLQ16602 461 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 TIGD5Q53EQ6 642 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 EARS2Q5JPH6 523 aaKnown RBP17.39■□□□□ 0.37
SF3B3-215ENST00000577085 SPOUT1Q5T280 376 aaKnown RBP17.39■□□□□ 0.37
SF3B3-215ENST00000577085 FAM228AQ86W67 206 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 EXOC8Q8IYI6 725 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 CMTR2Q8IYT2 770 aaKnown RBP17.39■□□□□ 0.37
SF3B3-215ENST00000577085 SLC7A3Q8WY07 619 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 ZNF689Q96CS4 500 aaPredicted RBP17.39■□□□□ 0.37
SF3B3-215ENST00000577085 ZNF668Q96K58 619 aaPredicted RBP17.39■□□□□ 0.37
SF3B3-215ENST00000577085 SH2D3AQ9BRG2 576 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 SH2B1Q9NRF2 756 aaPredicted RBP17.39■□□□□ 0.37
SF3B3-215ENST00000577085 RGS18Q9NS28 235 aa17.39■□□□□ 0.37
SF3B3-215ENST00000577085 TMEM150BA6NC51 233 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 EML1O00423 815 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 NEMFO60524 1076 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 GPC3P51654 580 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 HMGN5P82970 282 aaKnown RBP17.38■□□□□ 0.37
SF3B3-215ENST00000577085 GUCY1B3Q02153 619 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 TARBP2Q15633 366 aaKnown RBP17.38■□□□□ 0.37
SF3B3-215ENST00000577085 PLA2G4FQ68DD2 849 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 OTUD6AQ7L8S5 288 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 HAS1Q92839 578 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 TNFRSF25Q93038 417 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 CEP170P1Q96L14 293 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 CCDC43Q96MW1 224 aaKnown RBP17.38■□□□□ 0.37
SF3B3-215ENST00000577085 GCOM2Q9BZD3 368 aaPredicted RBP17.38■□□□□ 0.37
SF3B3-215ENST00000577085 PCDHA12Q9UN75 941 aa17.38■□□□□ 0.37
SF3B3-215ENST00000577085 TRANK1O15050 2925 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 C5orf67F2Z3F1 127 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 ST18O60284 1047 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 MGEA5O60502 916 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 ATP2B1P20020 1258 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 POLGP54098 1239 aaPredicted RBP17.37■□□□□ 0.37
SF3B3-215ENST00000577085 EPHA7Q15375 998 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 ANO5Q75V66 913 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 RHPN2Q8IUC4 686 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 LINC01465Q8N7H1 131 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 ADAMTS19Q8TE59 1207 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 CLP1Q92989 425 aaKnown RBP17.37■□□□□ 0.37
SF3B3-215ENST00000577085 LXNQ9BS40 222 aa17.37■□□□□ 0.37
SF3B3-215ENST00000577085 PLVAPQ9BX97 442 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms