RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 C6orf89Q6UWU4 347 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 FAM186BQ8IYM0 893 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 RBM46Q8TBY0 533 aaKnown RBP11.69□□□□□ -0.54
CCDC40-207ENST00000572253 FAM20AQ96MK3 541 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 NEUROG2Q9H2A3 272 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 STXBP5LQ9Y2K9 1186 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 ATP8A1Q9Y2Q0 1164 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 FAM187AA6NFU0 413 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 F8VZ95 297 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 TMEM253P0C7T8 217 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 SOX5P35711 763 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 DR1Q01658 176 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 FAM98CQ17RN3 349 aaKnown RBP11.69□□□□□ -0.54
CCDC40-207ENST00000572253 HS2ST1Q7LGA3 356 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 ANKS4BQ8N8V4 417 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 PROCA1Q8NCQ7 364 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-207ENST00000572253 SLC35C1Q96A29 364 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 HES6Q96HZ4 224 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 USP40Q9NVE5 1235 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 TTC7AQ9ULT0 858 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-207ENST00000572253 F8W031 263 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-207ENST00000572253 CLIC2O15247 247 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 PAEPP09466 180 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 BMT2Q1RMZ1 405 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 DENND2CQ68D51 928 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 EPM2AIP1Q7L775 607 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-207ENST00000572253 GIMAP7Q8NHV1 300 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 RAPGEF5Q92565 580 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 A1CFQ9NQ94 594 aaKnown RBP11.68□□□□□ -0.54
CCDC40-207ENST00000572253 RABGAP1Q9Y3P9 1069 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 CCDC169A6NNP5 214 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 TRIM37O94972 964 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 JAM2P57087 298 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 PPARDQ03181 441 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 IKQ13123 557 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-207ENST00000572253 DNAAF5Q86Y56 855 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 DCAF4Q8WV16 495 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 MBOAT7Q96N66 472 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 CELF4Q9BZC1 486 aaKnown RBP11.68□□□□□ -0.54
CCDC40-207ENST00000572253 SLC40A1Q9NP59 571 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 EVI5O60447 810 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 BUB1BO60566 1050 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-207ENST00000572253 BBOX1O75936 387 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 GBP1P32455 592 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 TAX1BP1Q86VP1 789 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 NEK9Q8TD19 979 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 JPH2Q9BR39 696 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-207ENST00000572253 TACO1Q9BSH4 297 aaKnown RBP11.68□□□□□ -0.54
CCDC40-207ENST00000572253 STK33Q9BYT3 514 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 STMN4Q9H169 189 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-207ENST00000572253 CARD9Q9H257 536 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 BHMT2Q9H2M3 363 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 SUGT1Q9Y2Z0 365 aa11.68□□□□□ -0.54
CCDC40-207ENST00000572253 NCANO14594 1321 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 BHMG1C9JSJ3 638 aaPredicted RBP11.67□□□□□ -0.54
CCDC40-207ENST00000572253 KRT13P13646 458 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 HSPA6P17066 643 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 ABCB4P21439 1286 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 SNCBQ16143 134 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 SLC35G2Q8TBE7 412 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 SELENOSQ9BQE4 189 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 MTRF1LQ9UGC7 380 aaKnown RBP11.67□□□□□ -0.54
CCDC40-207ENST00000572253 MYH4Q9Y623 1939 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 PPFIA2O75334 1257 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 CASP4P49662 377 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 PTENP60484 403 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 PSMC6P62333 389 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 CYP4A11Q02928 519 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 BYSLQ13895 437 aaKnown RBP11.67□□□□□ -0.54
CCDC40-207ENST00000572253 DHX34Q14147 1143 aaKnown RBP11.67□□□□□ -0.54
CCDC40-207ENST00000572253 COL24A1Q17RW2 1714 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 SLFN13Q68D06 897 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 GJB7Q6PEY0 223 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 RPAINQ86UA6 219 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 SLC51AQ86UW1 340 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 GLYCTKQ8IVS8 523 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 KCTD17Q8N5Z5 321 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 SEC14L1Q92503 715 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 CHMP6Q96FZ7 201 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 TRIM51Q9BSJ1 452 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 AMNQ9BXJ7 453 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 SIX2Q9NPC8 291 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 DNAJC12Q9UKB3 198 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 FRMD4BQ9Y2L6 1034 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 ATP2C2O75185 946 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 EYA4O95677 639 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 FLT3P36888 993 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 Q4G0T1 1027 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 MYCT1Q8N699 235 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 UBL4BQ8N7F7 174 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 CCDC197Q8NCU1 140 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 TBC1D16Q8TBP0 767 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 XPO6Q96QU8 1125 aaKnown RBP11.67□□□□□ -0.54
CCDC40-207ENST00000572253 MKNK1Q9BUB5 465 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 TAOK3Q9H2K8 898 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 PARP2Q9UGN5 583 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 NENFQ9UMX5 172 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 ZNF831Q5JPB2 1677 aa11.67□□□□□ -0.54
CCDC40-207ENST00000572253 ASTN1O14525 1302 aa11.66□□□□□ -0.54
CCDC40-207ENST00000572253 C5orf60A6NFR6 353 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms