RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 PATL2C9JE40 543 aaKnown RBP6.84□□□□□ -1.31
VPS53-208ENST00000570650 M0R2N6 131 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 CSPG5O95196 566 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 LINC00271P0C7V0 271 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 ZNF286BP0CG31 522 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 ICAM3P32942 547 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 TXLNAP40222 546 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 NBL1P41271 181 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 SEC13P55735 322 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 RRP1P56182 461 aaKnown RBP6.84□□□□□ -1.31
VPS53-208ENST00000570650 COASYQ13057 564 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 LAMC2Q13753 1193 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 SERINC5Q86VE9 423 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 KBTBD3Q8NAB2 608 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 ZSCAN1Q8NBB4 408 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 PPTC7Q8NI37 304 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 APBB2Q92870 758 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 PHF7Q9BWX1 381 aaPredicted RBP6.84□□□□□ -1.31
VPS53-208ENST00000570650 PLVAPQ9BX97 442 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 NAPBQ9H115 298 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 INCENPQ9NQS7 918 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 IL17RBQ9NRM6 502 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 CLEC1BQ9P126 229 aa6.84□□□□□ -1.31
VPS53-208ENST00000570650 FRMPD2Q68DX3 1309 aaPredicted RBP6.83□□□□□ -1.32
VPS53-208ENST00000570650 ADGRA3Q8IWK6 1321 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 C17orf102A2RUQ5 167 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 M0R2C6 588 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 RNF113AO15541 343 aaKnown RBP6.83□□□□□ -1.32
VPS53-208ENST00000570650 NMT2O60551 498 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 CAND2O75155 1236 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 ZFYP08048 801 aaPredicted RBP6.83□□□□□ -1.32
VPS53-208ENST00000570650 HOXD8P13378 290 aaPredicted RBP6.83□□□□□ -1.32
VPS53-208ENST00000570650 NOVP48745 357 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 TEAD4Q15561 434 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 STXBP2Q15833 593 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 PTPN21Q16825 1174 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 ANKMY2Q8IV38 441 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 EFHBQ8N7U6 833 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 RGS22Q8NE09 1264 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 NSUN6Q8TEA1 469 aaKnown RBP6.83□□□□□ -1.32
VPS53-208ENST00000570650 CLP1Q92989 425 aaKnown RBP6.83□□□□□ -1.32
VPS53-208ENST00000570650 ATP6V0A1Q93050 837 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 RPGRIP1Q96KN7 1286 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 RIPOR3Q96MK2 946 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 IWS1Q96ST2 819 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 MAF1Q9H063 256 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 CRISPLD1Q9H336 500 aa6.83□□□□□ -1.32
VPS53-208ENST00000570650 DDX41Q9UJV9 622 aaKnown RBP6.83□□□□□ -1.32
VPS53-208ENST00000570650 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS53-208ENST00000570650 USP15Q9Y4E8 981 aaPredicted RBP6.83□□□□□ -1.32
VPS53-208ENST00000570650 RIF1Q5UIP0 2472 aaKnown RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 RANBP6O60518 1105 aaKnown RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 PPFIA4O75335 1185 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 CTSHP09668 335 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 TOP1P11387 765 aaKnown RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 ATF7P17544 494 aaPredicted RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 NOS2P35228 1153 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 CAMK1Q14012 370 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 BTG3Q14201 252 aaPredicted RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 USH1GQ495M9 461 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 MCTP2Q6DN12 878 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 ADGRD2Q7Z7M1 963 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 PGBD3Q8N328 593 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 SYTL5Q8TDW5 730 aaPredicted RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 P2RX5Q93086 422 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 NKD2Q969F2 451 aaPredicted RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 TAAR1Q96RJ0 339 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 OSBPL7Q9BZF2 842 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 RC3H2Q9HBD1 1191 aaKnown RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 ECHDC1Q9NTX5 307 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 ZDHHC3Q9NYG2 299 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 BARX2Q9UMQ3 279 aaPredicted RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 PLAGL2Q9UPG8 496 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 RBM19Q9Y4C8 960 aaKnown RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 MRVI1Q9Y6F6 885 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 C5orf42Q9H799 3197 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 ZFHX2Q9C0A1 2572 aaPredicted RBP6.82□□□□□ -1.32
VPS53-208ENST00000570650 KIAA1217Q5T5P2 1943 aa6.82□□□□□ -1.32
VPS53-208ENST00000570650 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.81□□□□□ -1.32
VPS53-208ENST00000570650 EML1O00423 815 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 TREHO43280 583 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 EIF3JO75822 258 aaKnown RBP6.81□□□□□ -1.32
VPS53-208ENST00000570650 GLP2RO95838 553 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 PDGFBP01127 241 aaPredicted RBP6.81□□□□□ -1.32
VPS53-208ENST00000570650 PDHBP11177 359 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 HOXC8P31273 242 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 NRIP1P48552 1158 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 ZNF543Q08ER8 600 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 NAALADL2Q58DX5 795 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 FAM26DQ5JW98 314 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 ARHGEF16Q5VV41 709 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 FOXR1Q6PIV2 292 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 MCF2L2Q86YR7 1114 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 SIRT2Q8IXJ6 389 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 ADSSL1Q8N142 457 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 C1orf216Q8TAB5 229 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 SUSD6Q92537 303 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 ZNF689Q96CS4 500 aaPredicted RBP6.81□□□□□ -1.32
VPS53-208ENST00000570650 SPATA33Q96N06 139 aa6.81□□□□□ -1.32
VPS53-208ENST00000570650 RMDN3Q96TC7 470 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms