RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 KIAA1683Q9H0B3 1180 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 AGO4Q9HCK5 861 aaKnown RBP10.87□□□□□ -0.67
VPS53-206ENST00000570359 VWA5AO00534 786 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 UCHL3P15374 230 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 RPL13P26373 211 aaKnown RBP10.87□□□□□ -0.67
VPS53-206ENST00000570359 PON1P27169 355 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 USP8P40818 1118 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 HSD17B4P51659 736 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 PTK2Q05397 1052 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 BMS1Q14692 1282 aaKnown RBP10.87□□□□□ -0.67
VPS53-206ENST00000570359 EDRF1Q3B7T1 1238 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 FIGNQ5HY92 759 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 EEPD1Q7L9B9 569 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 TRAPPC11Q7Z392 1133 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 CENPFP49454 3210 aa10.87□□□□□ -0.67
VPS53-206ENST00000570359 RBAK-RBAKDNI3L0D1 243 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 PDXKO00764 312 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 DLG4P78352 724 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 SLC7A5Q01650 507 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 CCDC181Q5TID7 509 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 MCF2L2Q86YR7 1114 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 DAW1Q8N136 415 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 ZNF280CQ8ND82 737 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 ABCB6Q9NP58 842 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 TRAF3IP3Q9Y228 551 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 PHACTR2O75167 634 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 SERPING1P05155 500 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 PTPRAP18433 802 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 KLRC1P26715 233 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 YWHABP31946 246 aaKnown RBP10.86□□□□□ -0.67
VPS53-206ENST00000570359 BACE1P56817 501 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 FAM193AP78312 1265 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 WHAMMP3Q1A5X7 153 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 LONRF2Q1L5Z9 754 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 CBWD6Q4V339 395 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 CBWD3Q5JTY5 395 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 CBWD5Q5RIA9 395 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 ZNF720Q7Z2F6 126 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 PROCA1Q8NCQ7 364 aaPredicted RBP10.86□□□□□ -0.67
VPS53-206ENST00000570359 EHBP1Q8NDI1 1231 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 RBM46Q8TBY0 533 aaKnown RBP10.86□□□□□ -0.67
VPS53-206ENST00000570359 LPAR1Q92633 364 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 SLC35C1Q96A29 364 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 SAAL1Q96ER3 474 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 ALS2CR12Q96Q35 445 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 CBWD1Q9BRT8 395 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 GBP3Q9H0R5 595 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 GANQ9H2C0 597 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 PXMP2Q9NR77 195 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 AGPAT3Q9NRZ7 376 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 MYO1AQ9UBC5 1043 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 FRMD4BQ9Y2L6 1034 aa10.86□□□□□ -0.67
VPS53-206ENST00000570359 FRMPD4Q14CM0 1322 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 PALMO75781 387 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 TBC1D8O95759 1140 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 CCNE2O96020 404 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 GAP43P17677 238 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 ABCB4P21439 1286 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 ZNF280AP59817 542 aaPredicted RBP10.85□□□□□ -0.67
VPS53-206ENST00000570359 PPP4R3CPQ6ZMV5 832 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 GBP6Q6ZN66 633 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 SCYL3Q8IZE3 742 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 CCDC127Q96BQ5 260 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 PDCD2LQ9BRP1 358 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 FAM184BQ9ULE4 1060 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 HYOU1Q9Y4L1 999 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 FER1L6Q2WGJ9 1857 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 RGPD3A6NKT7 1758 aaPredicted RBP10.85□□□□□ -0.67
VPS53-206ENST00000570359 RGPD4Q7Z3J3 1758 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 ERICH4A6NGS2 130 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 DHX15O43143 795 aaKnown RBP10.85□□□□□ -0.67
VPS53-206ENST00000570359 PPP1R12BO60237 982 aaPredicted RBP10.85□□□□□ -0.67
VPS53-206ENST00000570359 DDNO94850 711 aaPredicted RBP10.85□□□□□ -0.67
VPS53-206ENST00000570359 PSMC2P35998 433 aaKnown RBP10.85□□□□□ -0.67
VPS53-206ENST00000570359 PLA2G4AP47712 749 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 QARSP47897 775 aaKnown RBP10.85□□□□□ -0.67
VPS53-206ENST00000570359 KLHDC7AQ5VTJ3 777 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 DCAF15Q66K64 600 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 IQCEQ6IPM2 695 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 MOB2Q70IA6 237 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 ZNF771Q7L3S4 317 aaPredicted RBP10.85□□□□□ -0.67
VPS53-206ENST00000570359 ZNF571Q7Z3V5 609 aaPredicted RBP10.85□□□□□ -0.67
VPS53-206ENST00000570359 FRMD5Q7Z6J6 570 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 PAGR1Q9BTK6 254 aa10.85□□□□□ -0.67
VPS53-206ENST00000570359 CHORDC1Q9UHD1 332 aaPredicted RBP10.85□□□□□ -0.67
VPS53-206ENST00000570359 DOCK5Q9H7D0 1870 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 POLR2AP24928 1970 aaKnown RBP10.84□□□□□ -0.67
VPS53-206ENST00000570359 P4HBP07237 508 aaKnown RBP10.84□□□□□ -0.67
VPS53-206ENST00000570359 GCLMP48507 274 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 RARRES1P49788 294 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 WDR78Q5VTH9 848 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 NLRX1Q86UT6 975 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 U2AF1L4Q8WU68 220 aaKnown RBP10.84□□□□□ -0.67
VPS53-206ENST00000570359 TSGA10Q9BZW7 698 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 GABBR1Q9UBS5 961 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 SYNPO2Q9UMS6 1093 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 ADM5C9JUS6 153 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 HIRAP54198 1017 aaPredicted RBP10.84□□□□□ -0.67
VPS53-206ENST00000570359 FSTL1Q12841 308 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 MAPK7Q13164 816 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms