RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 NR1I3Q14994 352 aa8.81□□□□□ -1
VPS39-213ENST00000570062 ECM1Q16610 540 aa8.81□□□□□ -1
VPS39-213ENST00000570062 NFIL3Q16649 462 aa8.81□□□□□ -1
VPS39-213ENST00000570062 BMT2Q1RMZ1 405 aa8.81□□□□□ -1
VPS39-213ENST00000570062 FAM110CQ1W6H9 321 aa8.81□□□□□ -1
VPS39-213ENST00000570062 RINT1Q6NUQ1 792 aa8.81□□□□□ -1
VPS39-213ENST00000570062 TTI2Q6NXR4 508 aa8.81□□□□□ -1
VPS39-213ENST00000570062 C1orf186Q6ZWK4 172 aa8.81□□□□□ -1
VPS39-213ENST00000570062 KCNK18Q7Z418 384 aa8.81□□□□□ -1
VPS39-213ENST00000570062 FILIP1Q7Z7B0 1213 aa8.81□□□□□ -1
VPS39-213ENST00000570062 ZNF598Q86UK7 904 aaKnown RBP8.81□□□□□ -1
VPS39-213ENST00000570062 MCPH1Q8NEM0 835 aa8.81□□□□□ -1
VPS39-213ENST00000570062 ZNF507Q8TCN5 953 aa8.81□□□□□ -1
VPS39-213ENST00000570062 KIFAP3Q92845 792 aa8.81□□□□□ -1
VPS39-213ENST00000570062 FAM167AQ96KS9 214 aa8.81□□□□□ -1
VPS39-213ENST00000570062 SRRTQ9BXP5 876 aaKnown RBP8.81□□□□□ -1
VPS39-213ENST00000570062 METTL14Q9HCE5 456 aaKnown RBP8.81□□□□□ -1
VPS39-213ENST00000570062 RGL1Q9NZL6 768 aa8.81□□□□□ -1
VPS39-213ENST00000570062 GDAQ9Y2T3 454 aa8.81□□□□□ -1
VPS39-213ENST00000570062 BTBD19C9JJ37 291 aa8.8□□□□□ -1
VPS39-213ENST00000570062 TRAF5O00463 557 aa8.8□□□□□ -1
VPS39-213ENST00000570062 N4BP3O15049 544 aa8.8□□□□□ -1
VPS39-213ENST00000570062 CETN3O15182 167 aa8.8□□□□□ -1
VPS39-213ENST00000570062 GAS2O43903 313 aaKnown RBP8.8□□□□□ -1
VPS39-213ENST00000570062 ATG7O95352 703 aa8.8□□□□□ -1
VPS39-213ENST00000570062 TAL1P17542 331 aaPredicted RBP8.8□□□□□ -1
VPS39-213ENST00000570062 SFPQP23246 707 aaKnown RBP eCLIP8.8□□□□□ -1
VPS39-213ENST00000570062 CASP1P29466 404 aa8.8□□□□□ -1
VPS39-213ENST00000570062 YWHABP31946 246 aaKnown RBP8.8□□□□□ -1
VPS39-213ENST00000570062 KCNJ6P48051 423 aa8.8□□□□□ -1
VPS39-213ENST00000570062 ZNF157P51786 506 aaPredicted RBP8.8□□□□□ -1
VPS39-213ENST00000570062 SMTNP53814 917 aa8.8□□□□□ -1
VPS39-213ENST00000570062 RTP1P59025 263 aa8.8□□□□□ -1
VPS39-213ENST00000570062 ITGB3BPQ13352 177 aaPredicted RBP8.8□□□□□ -1
VPS39-213ENST00000570062 PKDCCQ504Y2 493 aa8.8□□□□□ -1
VPS39-213ENST00000570062 ARSHQ5FYA8 562 aa8.8□□□□□ -1
VPS39-213ENST00000570062 XKR3Q5GH77 459 aa8.8□□□□□ -1
VPS39-213ENST00000570062 FKBP15Q5T1M5 1219 aa8.8□□□□□ -1
VPS39-213ENST00000570062 RGMBQ6NW40 437 aa8.8□□□□□ -1
VPS39-213ENST00000570062 METTL7BQ6UX53 244 aa8.8□□□□□ -1
VPS39-213ENST00000570062 HS2ST1Q7LGA3 356 aa8.8□□□□□ -1
VPS39-213ENST00000570062 CCDC186Q7Z3E2 898 aa8.8□□□□□ -1
VPS39-213ENST00000570062 PPFIBP1Q86W92 1011 aa8.8□□□□□ -1
VPS39-213ENST00000570062 VSTM4Q8IW00 320 aa8.8□□□□□ -1
VPS39-213ENST00000570062 MYCT1Q8N699 235 aa8.8□□□□□ -1
VPS39-213ENST00000570062 IL31RAQ8NI17 732 aa8.8□□□□□ -1
VPS39-213ENST00000570062 TMEM174Q8WUU8 243 aa8.8□□□□□ -1
VPS39-213ENST00000570062 SEPT1Q8WYJ6 367 aa8.8□□□□□ -1
VPS39-213ENST00000570062 HVCN1Q96D96 273 aa8.8□□□□□ -1
VPS39-213ENST00000570062 JPH2Q9BR39 696 aaPredicted RBP8.8□□□□□ -1
VPS39-213ENST00000570062 NAA15Q9BXJ9 866 aaKnown RBP8.8□□□□□ -1
VPS39-213ENST00000570062 HSD3B7Q9H2F3 369 aa8.8□□□□□ -1
VPS39-213ENST00000570062 ST6GALNAC4Q9H4F1 302 aa8.8□□□□□ -1
VPS39-213ENST00000570062 MRPL44Q9H9J2 332 aaKnown RBP8.8□□□□□ -1
VPS39-213ENST00000570062 VTA1Q9NP79 307 aa8.8□□□□□ -1
VPS39-213ENST00000570062 SLC39A2Q9NP94 309 aa8.8□□□□□ -1
VPS39-213ENST00000570062 SAMSN1Q9NSI8 373 aaKnown RBP8.8□□□□□ -1
VPS39-213ENST00000570062 FAM184BQ9ULE4 1060 aa8.8□□□□□ -1
VPS39-213ENST00000570062 EXOC7Q9UPT5 735 aa8.8□□□□□ -1
VPS39-213ENST00000570062 TRAF3IP3Q9Y228 551 aa8.8□□□□□ -1
VPS39-213ENST00000570062 NKRFO15226 690 aaKnown RBP eCLIP8.79□□□□□ -1
VPS39-213ENST00000570062 AP5Z1O43299 807 aa8.79□□□□□ -1
VPS39-213ENST00000570062 ZNF500O60304 480 aaPredicted RBP8.79□□□□□ -1
VPS39-213ENST00000570062 ATP9AO75110 1047 aa8.79□□□□□ -1
VPS39-213ENST00000570062 DGAT1O75907 488 aa8.79□□□□□ -1
VPS39-213ENST00000570062 ALDH1A1P00352 501 aa8.79□□□□□ -1
VPS39-213ENST00000570062 SLC10A3P09131 477 aa8.79□□□□□ -1
VPS39-213ENST00000570062 SUPT20HL2P0C7V6 817 aa8.79□□□□□ -1
VPS39-213ENST00000570062 ATP1A3P13637 1013 aa8.79□□□□□ -1
VPS39-213ENST00000570062 GJA5P36382 358 aa8.79□□□□□ -1
VPS39-213ENST00000570062 RFC5P40937 340 aa8.79□□□□□ -1
VPS39-213ENST00000570062 RARRES1P49788 294 aa8.79□□□□□ -1
VPS39-213ENST00000570062 MARSP56192 900 aaKnown RBP8.79□□□□□ -1
VPS39-213ENST00000570062 STX17P56962 302 aa8.79□□□□□ -1
VPS39-213ENST00000570062 ACTR2P61160 394 aa8.79□□□□□ -1
VPS39-213ENST00000570062 MLLT1Q03111 559 aaPredicted RBP8.79□□□□□ -1
VPS39-213ENST00000570062 TTLL4Q14679 1199 aa8.79□□□□□ -1
VPS39-213ENST00000570062 KNOP1Q1ED39 458 aaKnown RBP8.79□□□□□ -1
VPS39-213ENST00000570062 ANKRD40Q6AI12 368 aa8.79□□□□□ -1
VPS39-213ENST00000570062 ABHD15Q6UXT9 468 aa8.79□□□□□ -1
VPS39-213ENST00000570062 DLK2Q6UY11 383 aa8.79□□□□□ -1
VPS39-213ENST00000570062 CNGA4Q8IV77 575 aa8.79□□□□□ -1
VPS39-213ENST00000570062 LRRC8AQ8IWT6 810 aa8.79□□□□□ -1
VPS39-213ENST00000570062 FAM178BQ8IXR5 827 aa8.79□□□□□ -1
VPS39-213ENST00000570062 TRMT44Q8IYL2 757 aaKnown RBP8.79□□□□□ -1
VPS39-213ENST00000570062 SMYD4Q8IYR2 804 aaPredicted RBP8.79□□□□□ -1
VPS39-213ENST00000570062 SPC24Q8NBT2 197 aa8.79□□□□□ -1
VPS39-213ENST00000570062 KIAA0895Q8NCT3 520 aa8.79□□□□□ -1
VPS39-213ENST00000570062 SMC1BQ8NDV3 1235 aa8.79□□□□□ -1
VPS39-213ENST00000570062 ZNF397Q8NF99 534 aaPredicted RBP8.79□□□□□ -1
VPS39-213ENST00000570062 AFAP1L1Q8TED9 768 aa8.79□□□□□ -1
VPS39-213ENST00000570062 LRRC15Q8TF66 581 aa8.79□□□□□ -1
VPS39-213ENST00000570062 SCFD2Q8WU76 684 aa8.79□□□□□ -1
VPS39-213ENST00000570062 BRI3BPQ8WY22 251 aa8.79□□□□□ -1
VPS39-213ENST00000570062 KCNN1Q92952 543 aa8.79□□□□□ -1
VPS39-213ENST00000570062 GJA10Q969M2 543 aa8.79□□□□□ -1
VPS39-213ENST00000570062 REEP2Q9BRK0 252 aa8.79□□□□□ -1
VPS39-213ENST00000570062 EDEM3Q9BZQ6 932 aa8.79□□□□□ -1
VPS39-213ENST00000570062 ZHX3Q9H4I2 956 aa8.79□□□□□ -1
VPS39-213ENST00000570062 AZI2Q9H6S1 392 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms