RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 QARSP47897 775 aaKnown RBP22.8■■□□□ 1.24
CLK3-225ENST00000569063 HMGN5P82970 282 aaKnown RBP22.8■■□□□ 1.24
CLK3-225ENST00000569063 TBC1D8BQ0IIM8 1120 aa22.8■■□□□ 1.24
CLK3-225ENST00000569063 NFX1Q12986 1120 aaKnown RBP22.8■■□□□ 1.24
CLK3-225ENST00000569063 TMEM266Q2M3C6 531 aa22.8■■□□□ 1.24
CLK3-225ENST00000569063 LRRC71Q8N4P6 559 aa22.8■■□□□ 1.24
CLK3-225ENST00000569063 SAMD11Q96NU1 681 aa22.8■■□□□ 1.24
CLK3-225ENST00000569063 OSMRQ99650 979 aa22.8■■□□□ 1.24
CLK3-225ENST00000569063 C17orf80Q9BSJ5 609 aa22.8■■□□□ 1.24
CLK3-225ENST00000569063 RC3H2Q9HBD1 1191 aaKnown RBP22.8■■□□□ 1.24
CLK3-225ENST00000569063 LOXHD1Q8IVV2 1947 aa22.79■■□□□ 1.24
CLK3-225ENST00000569063 GPR182O15218 404 aa22.79■■□□□ 1.24
CLK3-225ENST00000569063 DKC1O60832 514 aaKnown RBP eCLIP22.79■■□□□ 1.24
CLK3-225ENST00000569063 P4HBP07237 508 aaKnown RBP22.79■■□□□ 1.24
CLK3-225ENST00000569063 NLRP11P59045 1033 aaKnown RBP22.79■■□□□ 1.24
CLK3-225ENST00000569063 SPIRE1Q08AE8 756 aa22.79■■□□□ 1.24
CLK3-225ENST00000569063 EPHA7Q15375 998 aa22.79■■□□□ 1.24
CLK3-225ENST00000569063 SAFBQ15424 915 aaKnown RBP eCLIP22.79■■□□□ 1.24
CLK3-225ENST00000569063 MTERF2Q49AM1 385 aa22.79■■□□□ 1.24
CLK3-225ENST00000569063 ZNF689Q96CS4 500 aaPredicted RBP22.79■■□□□ 1.24
CLK3-225ENST00000569063 C8orf76Q96K31 380 aa22.79■■□□□ 1.24
CLK3-225ENST00000569063 PPP1R16BQ96T49 567 aa22.79■■□□□ 1.24
CLK3-225ENST00000569063 ADAMTS10Q9H324 1103 aa22.79■■□□□ 1.24
CLK3-225ENST00000569063 ST3GAL5Q9UNP4 418 aa22.79■■□□□ 1.24
CLK3-225ENST00000569063 AKT3Q9Y243 479 aa22.79■■□□□ 1.24
CLK3-225ENST00000569063 IGKV6-21A0A0C4DH24 114 aa22.78■■□□□ 1.24
CLK3-225ENST00000569063 TMEM150BA6NC51 233 aa22.78■■□□□ 1.24
CLK3-225ENST00000569063 DDX11L8A8MPP1 907 aa22.78■■□□□ 1.24
CLK3-225ENST00000569063 DGKIO75912 1065 aa22.78■■□□□ 1.24
CLK3-225ENST00000569063 TTC3P53804 2025 aa22.78■■□□□ 1.24
CLK3-225ENST00000569063 ANO5Q75V66 913 aa22.78■■□□□ 1.24
CLK3-225ENST00000569063 NPAS4Q8IUM7 802 aa22.78■■□□□ 1.24
CLK3-225ENST00000569063 FBXO22Q8NEZ5 403 aa22.78■■□□□ 1.24
CLK3-225ENST00000569063 GDPD5Q8WTR4 605 aa22.78■■□□□ 1.24
CLK3-225ENST00000569063 UPF2Q9HAU5 1272 aaKnown RBP22.78■■□□□ 1.24
CLK3-225ENST00000569063 MGEA5O60502 916 aa22.77■■□□□ 1.24
CLK3-225ENST00000569063 GUCY1B3Q02153 619 aa22.77■■□□□ 1.24
CLK3-225ENST00000569063 EPC2Q52LR7 807 aa22.77■■□□□ 1.24
CLK3-225ENST00000569063 FAM228AQ86W67 206 aa22.77■■□□□ 1.24
CLK3-225ENST00000569063 MICALL1Q8N3F8 863 aa22.77■■□□□ 1.24
CLK3-225ENST00000569063 FIBCD1Q8N539 461 aa22.77■■□□□ 1.24
CLK3-225ENST00000569063 FBXO18Q8NFZ0 1043 aa22.77■■□□□ 1.24
CLK3-225ENST00000569063 FOXP1Q9H334 677 aaPredicted RBP22.77■■□□□ 1.24
CLK3-225ENST00000569063 PRDM6Q9NQX0 595 aa22.77■■□□□ 1.24
CLK3-225ENST00000569063 PCDHA12Q9UN75 941 aa22.77■■□□□ 1.24
CLK3-225ENST00000569063 COL4A4P53420 1690 aaPredicted RBP22.77■■□□□ 1.24
CLK3-225ENST00000569063 ADGRA3Q8IWK6 1321 aa22.77■■□□□ 1.24
CLK3-225ENST00000569063 DLL1O00548 723 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 WNT7AO00755 349 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 ST18O60284 1047 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 NEMFO60524 1076 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 MAFO75444 373 aaPredicted RBP22.76■■□□□ 1.23
CLK3-225ENST00000569063 STAG3L1P0CL83 205 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 EIF4BP23588 611 aaKnown RBP22.76■■□□□ 1.23
CLK3-225ENST00000569063 GPC3P51654 580 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 CDC42EP1Q00587 391 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 CALCRLQ16602 461 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 NCAPH2Q6IBW4 605 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 C4orf19Q8IY42 314 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 TMEM192Q8IY95 271 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 MTMR9Q96QG7 549 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 SH2D3AQ9BRG2 576 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 RGS18Q9NS28 235 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 C1orf112Q9NSG2 853 aa22.76■■□□□ 1.23
CLK3-225ENST00000569063 WRAP73Q9P2S5 460 aaPredicted RBP22.76■■□□□ 1.23
CLK3-225ENST00000569063 REV3LO60673 3130 aa22.75■■□□□ 1.23
CLK3-225ENST00000569063 LINC00271P0C7V0 271 aa22.75■■□□□ 1.23
CLK3-225ENST00000569063 SARSP49591 514 aaKnown RBP22.75■■□□□ 1.23
CLK3-225ENST00000569063 DNM2P50570 870 aa22.75■■□□□ 1.23
CLK3-225ENST00000569063 DRP2Q13474 957 aa22.75■■□□□ 1.23
CLK3-225ENST00000569063 FAM184AQ8NB25 1140 aa22.75■■□□□ 1.23
CLK3-225ENST00000569063 ATXN2LQ8WWM7 1075 aaKnown RBP22.75■■□□□ 1.23
CLK3-225ENST00000569063 CLP1Q92989 425 aaKnown RBP22.75■■□□□ 1.23
CLK3-225ENST00000569063 ADAM2Q99965 735 aa22.75■■□□□ 1.23
CLK3-225ENST00000569063 CYP26B1Q9NR63 512 aa22.75■■□□□ 1.23
CLK3-225ENST00000569063 RNF216Q9NWF9 866 aaPredicted RBP22.75■■□□□ 1.23
CLK3-225ENST00000569063 PPME1Q9Y570 386 aa22.75■■□□□ 1.23
CLK3-225ENST00000569063 DENND3A2RUS2 1198 aa22.74■■□□□ 1.23
CLK3-225ENST00000569063 H3BNC9 293 aa22.74■■□□□ 1.23
CLK3-225ENST00000569063 PLA2G4FQ68DD2 849 aa22.74■■□□□ 1.23
CLK3-225ENST00000569063 SLC24A5Q71RS6 500 aa22.74■■□□□ 1.23
CLK3-225ENST00000569063 JPH2Q9BR39 696 aaPredicted RBP22.74■■□□□ 1.23
CLK3-225ENST00000569063 LXNQ9BS40 222 aa22.74■■□□□ 1.23
CLK3-225ENST00000569063 ZSWIM4Q9H7M6 989 aa22.74■■□□□ 1.23
CLK3-225ENST00000569063 TTC12Q9H892 705 aaPredicted RBP22.74■■□□□ 1.23
CLK3-225ENST00000569063 RGL1Q9NZL6 768 aa22.74■■□□□ 1.23
CLK3-225ENST00000569063 THEGQ9P2T0 379 aa22.74■■□□□ 1.23
CLK3-225ENST00000569063 RWDD3Q9Y3V2 267 aa22.74■■□□□ 1.23
CLK3-225ENST00000569063 C9IYK1 514 aa22.73■■□□□ 1.23
CLK3-225ENST00000569063 C5orf67F2Z3F1 127 aa22.73■■□□□ 1.23
CLK3-225ENST00000569063 DARSP14868 501 aaKnown RBP22.73■■□□□ 1.23
CLK3-225ENST00000569063 BTG3Q14201 252 aaPredicted RBP22.73■■□□□ 1.23
CLK3-225ENST00000569063 DSC3Q14574 896 aa22.73■■□□□ 1.23
CLK3-225ENST00000569063 EXOC8Q8IYI6 725 aa22.73■■□□□ 1.23
CLK3-225ENST00000569063 CMTR2Q8IYT2 770 aaKnown RBP22.73■■□□□ 1.23
CLK3-225ENST00000569063 DYDC2Q96IM9 177 aa22.73■■□□□ 1.23
CLK3-225ENST00000569063 LRFN2Q9ULH4 789 aa22.73■■□□□ 1.23
CLK3-225ENST00000569063 PCDHB7Q9Y5E2 793 aa22.73■■□□□ 1.23
CLK3-225ENST00000569063 SLITRK3O94933 977 aa22.72■■□□□ 1.23
CLK3-225ENST00000569063 RB1P06400 928 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms