RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 GBP2P32456 591 aaPredicted RBP13.03□□□□□ -0.32
CDH3-208ENST00000569036 LAIR1Q6GTX8 287 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 TSSK4Q6SA08 328 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 STOX1Q6ZVD7 989 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 SLC39A11Q8N1S5 342 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 KBTBD3Q8NAB2 608 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 AUTS2Q8WXX7 1259 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 ADAM2Q99965 735 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 SLC2A4RGQ9NR83 387 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 C1orf112Q9NSG2 853 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 SEMA4GQ9NTN9 838 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 EPS15L1Q9UBC2 864 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 IGSF10Q6WRI0 2623 aa13.03□□□□□ -0.32
CDH3-208ENST00000569036 MYH15Q9Y2K3 1946 aa13.02□□□□□ -0.32
CDH3-208ENST00000569036 DENND3A2RUS2 1198 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 RPLP2P05387 115 aaKnown RBP13.02□□□□□ -0.33
CDH3-208ENST00000569036 CCND2P30279 289 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 SP4Q02446 784 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 GHRHRQ02643 423 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 NFX1Q12986 1120 aaKnown RBP13.02□□□□□ -0.33
CDH3-208ENST00000569036 SEMA3FQ13275 785 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 NEDD9Q14511 834 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 QRICH1Q2TAL8 776 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 GPATCH4Q5T3I0 446 aaKnown RBP13.02□□□□□ -0.33
CDH3-208ENST00000569036 IL31Q6EBC2 164 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 SLC24A5Q71RS6 500 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 NXPE3Q969Y0 559 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 SHDQ96IW2 340 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 CELF4Q9BZC1 486 aaKnown RBP13.02□□□□□ -0.33
CDH3-208ENST00000569036 TMEM117Q9H0C3 514 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 ZBP1Q9H171 429 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 ATP6V0A4Q9HBG4 840 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 RGS18Q9NS28 235 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 TMEM161AQ9NX61 479 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 RAB23Q9ULC3 237 aa13.02□□□□□ -0.33
CDH3-208ENST00000569036 MTF2Q9Y483 593 aaPredicted RBP13.02□□□□□ -0.33
CDH3-208ENST00000569036 KANSL1LA0AUZ9 987 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 SPDYE4A6NLX3 237 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 ORC4O43929 436 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 RETP07949 1114 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 MARK3P27448 753 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 IGBP1P78318 339 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 CSRP2Q16527 193 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 C15orf39Q6ZRI6 1047 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 ITPRIPQ8IWB1 547 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 LRRC43Q8N309 656 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 TMEM87AQ8NBN3 555 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 MAP4K1Q92918 833 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 CASD1Q96PB1 797 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 MYADMQ96S97 322 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 DDX23Q9BUQ8 820 aaKnown RBP13.01□□□□□ -0.33
CDH3-208ENST00000569036 TMEM121BQ9BXQ6 578 aaPredicted RBP13.01□□□□□ -0.33
CDH3-208ENST00000569036 PRMT8Q9NR22 394 aaPredicted RBP13.01□□□□□ -0.33
CDH3-208ENST00000569036 RNF19AQ9NV58 838 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 LAMA5O15230 3695 aa13.01□□□□□ -0.33
CDH3-208ENST00000569036 LAMA1P25391 3075 aa13□□□□□ -0.33
CDH3-208ENST00000569036 KDM3AQ9Y4C1 1321 aa13□□□□□ -0.33
CDH3-208ENST00000569036 TMEM8BA6NDV4 472 aa13□□□□□ -0.33
CDH3-208ENST00000569036 MAGEA9P43362 315 aa13□□□□□ -0.33
CDH3-208ENST00000569036 BMS1Q14692 1282 aaKnown RBP13□□□□□ -0.33
CDH3-208ENST00000569036 ZKSCAN2Q63HK3 967 aa13□□□□□ -0.33
CDH3-208ENST00000569036 ADGRF4Q8IZF3 695 aa13□□□□□ -0.33
CDH3-208ENST00000569036 VPS52Q8N1B4 723 aa13□□□□□ -0.33
CDH3-208ENST00000569036 SEC62Q99442 399 aaKnown RBP13□□□□□ -0.33
CDH3-208ENST00000569036 TCP11L1Q9NUJ3 509 aa13□□□□□ -0.33
CDH3-208ENST00000569036 IRAK3Q9Y616 596 aa13□□□□□ -0.33
CDH3-208ENST00000569036 CLUHO75153 1309 aa12.99□□□□□ -0.33
CDH3-208ENST00000569036 SPATA31C2B4DYI2 1134 aa12.99□□□□□ -0.33
CDH3-208ENST00000569036 TM4SF5O14894 197 aa12.99□□□□□ -0.33
CDH3-208ENST00000569036 FOXP2O15409 715 aa12.99□□□□□ -0.33
CDH3-208ENST00000569036 ZFYP08048 801 aaPredicted RBP12.99□□□□□ -0.33
CDH3-208ENST00000569036 HOXA13P31271 388 aaPredicted RBP12.99□□□□□ -0.33
CDH3-208ENST00000569036 TCF7P36402 384 aaPredicted RBP12.99□□□□□ -0.33
CDH3-208ENST00000569036 FAM189BP81408 668 aa12.99□□□□□ -0.33
CDH3-208ENST00000569036 UBXN2BQ14CS0 331 aa12.99□□□□□ -0.33
CDH3-208ENST00000569036 WTAPQ15007 396 aa12.99□□□□□ -0.33
CDH3-208ENST00000569036 GNPTABQ3T906 1256 aa12.99□□□□□ -0.33
CDH3-208ENST00000569036 INPP4AQ96PE3 977 aaPredicted RBP12.99□□□□□ -0.33
CDH3-208ENST00000569036 FAM126AQ9BYI3 521 aaPredicted RBP12.99□□□□□ -0.33
CDH3-208ENST00000569036 OSBPL6Q9BZF3 934 aa12.99□□□□□ -0.33
CDH3-208ENST00000569036 ELAC1Q9H777 363 aaKnown RBP12.99□□□□□ -0.33
CDH3-208ENST00000569036 WDR6Q9NNW5 1121 aaKnown RBP12.99□□□□□ -0.33
CDH3-208ENST00000569036 PCDHA1Q9Y5I3 950 aa12.99□□□□□ -0.33
CDH3-208ENST00000569036 FREM2Q5SZK8 3169 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 FAM170BA6NMN3 283 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 NCLP19338 710 aaKnown RBP12.98□□□□□ -0.33
CDH3-208ENST00000569036 LIMK1P53667 647 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 MRPS9P82933 396 aaKnown RBP12.98□□□□□ -0.33
CDH3-208ENST00000569036 KRT76Q01546 638 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 SNW1Q13573 536 aaKnown RBP12.98□□□□□ -0.33
CDH3-208ENST00000569036 HTR4Q13639 388 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 SOWAHCQ53LP3 525 aaPredicted RBP12.98□□□□□ -0.33
CDH3-208ENST00000569036 FAM43BQ6ZT52 329 aaPredicted RBP12.98□□□□□ -0.33
CDH3-208ENST00000569036 PPFIBP1Q86W92 1011 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 BBXQ8WY36 941 aaPredicted RBP12.98□□□□□ -0.33
CDH3-208ENST00000569036 STAMQ92783 540 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 MYL10Q9BUA6 226 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 ERAP1Q9NZ08 941 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 ANAPC4Q9UJX5 808 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 NOC2LQ9Y3T9 749 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms