RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZC3H12CQ9C0D7 883 aaKnown RBP15.72■□□□□ 0.11
VPS35-210ENST00000568784 EIF4E1BA6NMX2 242 aaKnown RBP15.72■□□□□ 0.11
VPS35-210ENST00000568784 SHROOM1Q2M3G4 852 aaPredicted RBP15.72■□□□□ 0.11
VPS35-210ENST00000568784 CNPY4Q8N129 248 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 CYP2W1Q8TAV3 490 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 RBM46Q8TBY0 533 aaKnown RBP15.72■□□□□ 0.11
VPS35-210ENST00000568784 GANQ9H2C0 597 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 FAM114A2Q9NRY5 505 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 BCL9LQ86UU0 1499 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 CCDC188H7C350 402 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 PPP1R11O60927 126 aaPredicted RBP15.71■□□□□ 0.11
VPS35-210ENST00000568784 CHN1P15882 459 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 KCNJ1P48048 391 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 BIRC3Q13489 604 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 NSMFQ6X4W1 530 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 NEK9Q8TD19 979 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 AIPL1Q9NZN9 384 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 MTRF1LQ9UGC7 380 aaKnown RBP15.71■□□□□ 0.11
VPS35-210ENST00000568784 DAGLAQ9Y4D2 1042 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 ZBTB39O15060 712 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 ATMINO43313 823 aaPredicted RBP15.71■□□□□ 0.11
VPS35-210ENST00000568784 ACSL3O95573 720 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 PPP4R3AQ6IN85 833 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 KIAA0825Q8IV33 1275 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 PRPF38AQ8NAV1 312 aaKnown RBP15.71■□□□□ 0.11
VPS35-210ENST00000568784 HOOK2Q96ED9 719 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 FAM212AQ96EL1 285 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 VCPKMTQ9H867 229 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 SWAP70Q9UH65 585 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 PPP1R9AQ9ULJ8 1098 aa15.71■□□□□ 0.11
VPS35-210ENST00000568784 THRAP3Q9Y2W1 955 aaKnown RBP15.71■□□□□ 0.11
VPS35-210ENST00000568784 DDX3XO00571 662 aaKnown RBP eCLIP15.71■□□□□ 0.12e-9■■■■■ 46.6
VPS35-210ENST00000568784 SHBGP04278 402 aa15.71■□□□□ 0.1
VPS35-210ENST00000568784 FERP16591 822 aa15.71■□□□□ 0.1
VPS35-210ENST00000568784 PPP4CP60510 307 aa15.71■□□□□ 0.1
VPS35-210ENST00000568784 IRF2BP2Q7Z5L9 587 aa15.71■□□□□ 0.1
VPS35-210ENST00000568784 SYN2Q92777 582 aaPredicted RBP15.71■□□□□ 0.1
VPS35-210ENST00000568784 CDCA7Q9BWT1 371 aaPredicted RBP15.71■□□□□ 0.1
VPS35-210ENST00000568784 TBK1Q9UHD2 729 aa15.71■□□□□ 0.1
VPS35-210ENST00000568784 DBR1Q9UK59 544 aaKnown RBP15.71■□□□□ 0.1
VPS35-210ENST00000568784 AJAP1Q9UKB5 411 aaPredicted RBP15.71■□□□□ 0.1
VPS35-210ENST00000568784 ABCB11O95342 1321 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 TIAM2Q8IVF5 1701 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 ESYT2A0FGR8 921 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 GCFC2P16383 781 aaKnown RBP15.7■□□□□ 0.1
VPS35-210ENST00000568784 COG2Q14746 738 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 SEPT2Q15019 361 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 FAM196AQ6ZSG2 479 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 PAXIP1Q6ZW49 1069 aaPredicted RBP15.7■□□□□ 0.1
VPS35-210ENST00000568784 PARP9Q8IXQ6 854 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 FAM178BQ8IXR5 827 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 FBXO25Q8TCJ0 367 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 ASIC3Q9UHC3 531 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 ZCWPW2Q504Y3 356 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 ODR4Q5SWX8 454 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 GDAP1Q8TB36 358 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 TCEAL9Q9UHQ7 104 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 PDE6BP35913 854 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 SLC29A2Q14542 456 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 SEL1L2Q5TEA6 688 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 CCDC63Q8NA47 563 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 ELMO3Q96BJ8 720 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 CHMP6Q96FZ7 201 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 RUSC1Q9BVN2 902 aa15.7■□□□□ 0.1
VPS35-210ENST00000568784 METTL14Q9HCE5 456 aaKnown RBP15.7■□□□□ 0.1
VPS35-210ENST00000568784 ADAMTSL3P82987 1691 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 CASZ1Q86V15 1759 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 GPR75-ASB3A0A0A6YYF3 556 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 CYB5D1Q6P9G0 228 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 ZNF572Q7Z3I7 529 aaPredicted RBP15.69■□□□□ 0.1
VPS35-210ENST00000568784 TMC3Q7Z5M5 1100 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 PRMT1Q99873 361 aaKnown RBP15.69■□□□□ 0.1
VPS35-210ENST00000568784 THAP2Q9H0W7 228 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 LRRC4CQ9HCJ2 640 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 PMS2P54278 862 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 CALCOCO2Q13137 446 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 GPATCH4Q5T3I0 446 aaKnown RBP15.69■□□□□ 0.1
VPS35-210ENST00000568784 CCDC174Q6PII3 467 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 C18orf8Q96DM3 657 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 TAOK3Q9H2K8 898 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 UBE2TQ9NPD8 197 aaPredicted RBP15.69■□□□□ 0.1
VPS35-210ENST00000568784 SRCAPQ6ZRS2 3230 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 RPS6KA4O75676 772 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 TNFRSF8P28908 595 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 GIT2Q14161 759 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 NEDD9Q14511 834 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 SPRED3Q2MJR0 410 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 XPO6Q96QU8 1125 aaKnown RBP15.69■□□□□ 0.1
VPS35-210ENST00000568784 DDX4Q9NQI0 724 aaKnown RBP15.69■□□□□ 0.1
VPS35-210ENST00000568784 TAS2R14Q9NYV8 317 aa15.69■□□□□ 0.1
VPS35-210ENST00000568784 FSBPO95073 299 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 PSMC2P35998 433 aaKnown RBP15.68■□□□□ 0.1
VPS35-210ENST00000568784 IFI35P80217 286 aaPredicted RBP15.68■□□□□ 0.1
VPS35-210ENST00000568784 ARSHQ5FYA8 562 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 SLC10A5Q5PT55 438 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 CAPN12Q6ZSI9 719 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 SLFN12Q8IYM2 578 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 KCTD10Q9H3F6 313 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 F8VZ95 297 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 DNM1LO00429 736 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms