RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CYP1A1P04798 512 aaPredicted RBP3.77□□□□□ -1.81
VPS35-208ENST00000568612 U2AF2P26368 475 aaKnown RBP eCLIP3.77□□□□□ -1.81
VPS35-208ENST00000568612 CYP2C19P33261 490 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 MAP2K2P36507 400 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 TRPC1P48995 793 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 RWDD2BP57060 319 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 RABEP1Q15276 862 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 CCDC144BQ3MJ40 725 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 TTC31Q49AM3 519 aaPredicted RBP3.77□□□□□ -1.81
VPS35-208ENST00000568612 PAN2Q504Q3 1202 aaKnown RBP3.77□□□□□ -1.81
VPS35-208ENST00000568612 C2orf27AQ580R0 203 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 FAM47CQ5HY64 1035 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 PHF19Q5T6S3 580 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 VASNQ6EMK4 673 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 KLHL10Q6JEL2 608 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 KCTD1Q719H9 257 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.77□□□□□ -1.81
VPS35-208ENST00000568612 EFCAB13Q8IY85 973 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 KRT222Q8N1A0 295 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 LILRB2Q8N423 598 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 CISD2Q8N5K1 135 aaKnown RBP3.77□□□□□ -1.81
VPS35-208ENST00000568612 LINC00482Q8N8I6 264 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 PCDH19Q8TAB3 1148 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 C17orf50Q8WW18 174 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 CLEC4DQ8WXI8 215 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 DDX1Q92499 740 aaKnown RBP3.77□□□□□ -1.81
VPS35-208ENST00000568612 PDLIM2Q96JY6 352 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 MAGEB10Q96LZ2 347 aaPredicted RBP3.77□□□□□ -1.81
VPS35-208ENST00000568612 CEP89Q96ST8 783 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 LNPKQ9C0E8 428 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 XYLT2Q9H1B5 865 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 TMX1Q9H3N1 280 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 L2HGDHQ9H9P8 463 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 SLC52A2Q9HAB3 445 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 TOMM22Q9NS69 142 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 RIC8BQ9NVN3 520 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 POLR1AO95602 1720 aaPredicted RBP3.77□□□□□ -1.81
VPS35-208ENST00000568612 CEP164Q9UPV0 1460 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 MYOM3Q5VTT5 1437 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 RSF1Q96T23 1441 aaPredicted RBP3.77□□□□□ -1.81
VPS35-208ENST00000568612 WDR97A6NE52 1622 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 KTN1Q86UP2 1357 aaKnown RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 EIF4G1Q04637 1599 aaKnown RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 A0A0G2JLL6 359 aaPredicted RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 MYO1CO00159 1063 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 GSTA4O15217 222 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 EFCAB14O75071 495 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 RASGRP1O95267 797 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 VDRP11473 427 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 PDE6AP16499 860 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 RPL13P26373 211 aaKnown RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 GLRBP48167 497 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 DLX2Q07687 328 aaPredicted RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 KIAA2012Q0VF49 1180 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 ADAM9Q13443 819 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 NFIXQ14938 502 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 GPR19Q15760 415 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 CRY1Q16526 586 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 SLC5A9Q2M3M2 681 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 MFSD4BQ5TF39 518 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 BTBD8Q5XKL5 378 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 TTLL5Q6EMB2 1281 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 TRMT10BQ6PF06 316 aaKnown RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 ARHGAP36Q6ZRI8 547 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 OSTM1Q86WC4 334 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 PTRH1Q86Y79 214 aaKnown RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 FMNL3Q8IVF7 1028 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 TXLNBQ8N3L3 684 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 SAMD3Q8N6K7 520 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 ADAMTS17Q8TE56 1095 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 SMCR8Q8TEV9 937 aaPredicted RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 KISS1RQ969F8 398 aaPredicted RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 FAXDC2Q96IV6 333 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 C20orf173Q96LM9 149 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 CFAP53Q96M91 514 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 TMEM209Q96SK2 561 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 SH3GL3Q99963 347 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 POLR3CQ9BUI4 534 aaPredicted RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 JADE2Q9NQC1 790 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 BLOC1S6Q9UL45 172 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 TELO2Q9Y4R8 837 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 MORC2Q9Y6X9 1032 aaPredicted RBP3.76□□□□□ -1.81
VPS35-208ENST00000568612 YEATS2Q9ULM3 1422 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 KDRP35968 1356 aa3.76□□□□□ -1.81
VPS35-208ENST00000568612 CCDC163A0A0D9SF12 145 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 PRAMEF25A6NGN4 478 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 ERICH4A6NGS2 130 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 ARVCFO00192 962 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 CTIFO43310 598 aaKnown RBP3.75□□□□□ -1.81
VPS35-208ENST00000568612 KIF5CO60282 957 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 CYP7B1O75881 506 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 FBXO21O94952 628 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 IGHDP01880 384 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 NBPF7P0C2Y1 421 aaPredicted RBP3.75□□□□□ -1.81
VPS35-208ENST00000568612 FAHP16930 419 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 ALDH1B1P30837 517 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 RPS6KA3P51812 740 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 EIF5P55010 431 aaKnown RBP3.75□□□□□ -1.81
VPS35-208ENST00000568612 HNRNPH2P55795 449 aaKnown RBP3.75□□□□□ -1.81
VPS35-208ENST00000568612 NOLC1Q14978 699 aaKnown RBP eCLIP3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms