RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 BHMT2Q9H2M3 363 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 CUEDC2Q9H467 287 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 NRBP2Q9NSY0 501 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 DACT1Q9NYF0 836 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 SEPT9Q9UHD8 586 aaPredicted RBP9.43□□□□□ -0.9
SF3B3-212ENST00000568539 USP25Q9UHP3 1055 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 SERTAD1Q9UHV2 236 aa9.43□□□□□ -0.9
SF3B3-212ENST00000568539 GRIN2DO15399 1336 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 A0A1W2PQ45 241 aaPredicted RBP9.42□□□□□ -0.9
SF3B3-212ENST00000568539 A0A1W2PQY0 241 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 KBTBD13C9JR72 458 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 HBP1O60381 514 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 MBD3O95983 291 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 TFRCP02786 760 aaKnown RBP9.42□□□□□ -0.9
SF3B3-212ENST00000568539 PLA2G4BP0C869 781 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 C7P10643 843 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 INSRRP14616 1297 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 CAPN2P17655 700 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 PTMSP20962 102 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 HOXC8P31273 242 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 SLC12A3P55017 1021 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 MCM6Q14566 821 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 MTERF2Q49AM1 385 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 XKR9Q5GH70 373 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 ZNF484Q5JVG2 852 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 SH3RF1Q7Z6J0 888 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 CEP57L1Q8IYX8 460 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 CEP170P1Q96L14 293 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 GLT1D1Q96MS3 346 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 TIGD1Q96MW7 591 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 DCBLD2Q96PD2 775 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 MTRQ99707 1265 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 SH2D3AQ9BRG2 576 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 MAGEF1Q9HAY2 307 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 CYP26B1Q9NR63 512 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 KBTBD4Q9NVX7 518 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 MCM3APO60318 1980 aa9.42□□□□□ -0.9
SF3B3-212ENST00000568539 COL1A2P08123 1366 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 NRCAMQ92823 1304 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 ARHGEF35A5YM69 484 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 KINO60870 393 aaKnown RBP9.41□□□□□ -0.9
SF3B3-212ENST00000568539 SMIM10L2AP0DMW4 78 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 SMIM10L2BP0DMW5 78 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 COL6A1P12109 1028 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 CYP11B2P19099 503 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 CHMP4BP1P59074 171 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 PPFIA1Q13136 1202 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 ITGA7Q13683 1181 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 HIC1Q14526 733 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 DHX8Q14562 1220 aaKnown RBP9.41□□□□□ -0.9
SF3B3-212ENST00000568539 GRIK4Q16099 956 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 NBPF20Q3BBV1 942 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 MARCH8Q5T0T0 291 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 PADI6Q6TGC4 694 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 SV2BQ7L1I2 683 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 SESTD1Q86VW0 696 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 ANKLE1Q8NAG6 615 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 CNNM3Q8NE01 707 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 PPP1R13LQ8WUF5 828 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 LMBR1Q8WVP7 490 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 TRAPPC12Q8WVT3 735 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 STAMQ92783 540 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 PAGE5Q96GU1 130 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 RUSC1Q9BVN2 902 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 TNMDQ9H2S6 317 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 SETD4Q9NVD3 440 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 HDAC6Q9UBN7 1215 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 PPME1Q9Y570 386 aa9.41□□□□□ -0.9
SF3B3-212ENST00000568539 RRN3P2A6NIE6 340 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 DLL1O00548 723 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 USO1O60763 962 aaKnown RBP9.4□□□□□ -0.9
SF3B3-212ENST00000568539 MAFO75444 373 aaPredicted RBP9.4□□□□□ -0.9
SF3B3-212ENST00000568539 DGAT1O75907 488 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 C22orf31O95567 290 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 SSBP05455 408 aaKnown RBP eCLIP9.4□□□□□ -0.9
SF3B3-212ENST00000568539 GUCY2CP25092 1073 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 RFC5P40937 340 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 IGBP1P78318 339 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 ADAM17P78536 824 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 MDM2Q00987 491 aaPredicted RBP9.4□□□□□ -0.9
SF3B3-212ENST00000568539 KLHL40Q2TBA0 621 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 ARSHQ5FYA8 562 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 RINT1Q6NUQ1 792 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 KANK3Q6NY19 840 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 NFRKBQ6P4R8 1299 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 C1orf186Q6ZWK4 172 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 GPBP1Q86WP2 473 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 ELOA2Q8IYF1 753 aaPredicted RBP9.4□□□□□ -0.9
SF3B3-212ENST00000568539 GRAMD1CQ8IYS0 662 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 C7orf31Q8N865 590 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 SLC43A3Q8NBI5 491 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 DIS3LQ8TF46 1054 aaKnown RBP9.4□□□□□ -0.9
SF3B3-212ENST00000568539 VTI1AQ96AJ9 217 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 CCDC43Q96MW1 224 aaKnown RBP9.4□□□□□ -0.9
SF3B3-212ENST00000568539 DHX33Q9H6R0 707 aaKnown RBP9.4□□□□□ -0.9
SF3B3-212ENST00000568539 XPNPEP1Q9NQW7 623 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 STARD7Q9NQZ5 370 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 PDLIM7Q9NR12 457 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 KCND2Q9NZV8 630 aa9.4□□□□□ -0.9
SF3B3-212ENST00000568539 GTF2IRD1Q9UHL9 959 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms