RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	RIOX1	Q9H6W3	641 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	ATP6V0A4	Q9HBG4	840 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	C1orf112	Q9NSG2	853 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	DUSP12	Q9UNI6	340 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	ST3GAL5	Q9UNP4	418 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	KDM3A	Q9Y4C1	1321 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	KAT6A	Q92794	2004 aa		13.52	□□□□□ -0.24
CLK3-222	ENST00000568232	KRBA1	A5PL33	1030 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	CYTH3	O43739	400 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	CFH	P08603	1231 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	CHRM1	P11229	460 aa	Predicted RBP	13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	FAM189B	P81408	668 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	GSE1	Q14687	1217 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	SPECC1	Q5M775	1068 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	AUTS2	Q8WXX7	1259 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	PPP1R16B	Q96T49	567 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	KCNK12	Q9HB15	430 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	RNF19A	Q9NV58	838 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	TMEM161A	Q9NX61	479 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	SPG21	Q9NZD8	308 aa		13.52	□□□□□ -0.25
CLK3-222	ENST00000568232	PNMA6F	A0A0J9YX94	578 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	SMIM35	A0A1B0GVV1	85 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	CXCL14	O95715	111 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	SP9	P0CG40	484 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	ITGB5	P18084	799 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	MTHFD1L	Q6UB35	978 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	NME8	Q8N427	588 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	SMARCC2	Q8TAQ2	1214 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	UBAC1	Q9BSL1	405 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	TMEM117	Q9H0C3	514 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	RALY	Q9UKM9	306 aa	Known RBP	13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	CEP250	Q9BV73	2442 aa		13.51	□□□□□ -0.25
CLK3-222	ENST00000568232	CHD6	Q8TD26	2715 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	ACACB	O00763	2458 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	CACNA1G	O43497	2377 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	NT5C1B-RDH14	C9J2C7	533 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	MEIS2	O14770	477 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	DCN	P07585	359 aa	Known RBP	13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	PPM1A	P35813	382 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	ATXN1	P54253	815 aa	Known RBP	13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	TRAF1	Q13077	416 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	SEC23A	Q15436	765 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	ST3GAL2	Q16842	350 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	XRRA1	Q6P2D8	792 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	RSAD2	Q8WXG1	361 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	ACSF2	Q96CM8	615 aa	Predicted RBP	13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	GPRASP2	Q96D09	838 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	LOXHD1	Q8IVV2	1947 aa		13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	TPR	P12270	2363 aa	Known RBP	13.5	□□□□□ -0.25
CLK3-222	ENST00000568232	KLRC1	P26715	233 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	GRM4	Q14833	912 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	CYB5R4	Q7L1T6	521 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	FAM228A	Q86W67	206 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	KIAA0319L	Q8IZA0	1049 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	SLC39A11	Q8N1S5	342 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	SUMF1	Q8NBK3	374 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	SPOCK2	Q92563	424 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	AZI2	Q9H6S1	392 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	ELAC1	Q9H777	363 aa	Known RBP	13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	SENP2	Q9HC62	589 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	DZANK1	Q9NVP4	752 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	CA14	Q9ULX7	337 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	PCDHB15	Q9Y5E8	787 aa		13.49	□□□□□ -0.25
CLK3-222	ENST00000568232	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	GPR182	O15218	404 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	N4BP1	O75113	896 aa	Known RBP	13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	RFX1	P22670	979 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	METAP2	P50579	478 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	PDE1A	P54750	535 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	MTMR1	Q13613	665 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	DSC3	Q14574	896 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	KIZ	Q2M2Z5	673 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	ZC3H14	Q6PJT7	736 aa	Known RBP	13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	CCDC149	Q6ZUS6	474 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	OTOP3	Q7RTS5	596 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	VPS52	Q8N1B4	723 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	LRRC43	Q8N309	656 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	SLC22A17	Q8WUG5	538 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	CUL5	Q93034	780 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	CDHR1	Q96JP9	859 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	OSMR	Q99650	979 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	TBC1D17	Q9HA65	648 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	WNT16	Q9UBV4	365 aa		13.48	□□□□□ -0.25
CLK3-222	ENST00000568232	OTOGL	Q3ZCN5	2332 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	DCDC2B	A2VCK2	349 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	POTEM	A6NI47	508 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	NT5C2	P49902	561 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	STAT5B	P51692	787 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	TBC1D8B	Q0IIM8	1120 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	CLLU1OS	Q5K130	101 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	POTEG	Q6S5H5	508 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	GPR149	Q86SP6	731 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	CABP7	Q86V35	215 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	TMEM173	Q86WV6	379 aa	Predicted RBP	13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	C1orf210	Q8IVY1	113 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	ABI1	Q8IZP0	508 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	TMEM87A	Q8NBN3	555 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	RNF169	Q8NCN4	708 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	RILPL2	Q969X0	211 aa		13.47	□□□□□ -0.25
CLK3-222	ENST00000568232	KRT23	Q9C075	422 aa		13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms