RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 FUKQ8N0W3 1084 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 SYNPOQ8N3V7 929 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 SLC16A11Q8NCK7 471 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 RPGRQ92834 1020 aaKnown RBP4.31□□□□□ -1.72
VPS35-207ENST00000568191 GCDHQ92947 438 aaPredicted RBP4.31□□□□□ -1.72
VPS35-207ENST00000568191 WWC2-AS2Q96NR7 200 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 FOXB1Q99853 325 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 DPYSL5Q9BPU6 564 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 CSRNP2Q9H175 543 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 PMS2P1A4D2B8 440 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 GOLGA8BA8MQT2 603 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 M0R2C6 588 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 DAPK3O43293 454 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 AKAP8O43823 692 aaKnown RBP4.3□□□□□ -1.72
VPS35-207ENST00000568191 RAPGEF3O95398 923 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 MPIG6BO95866 241 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 KIF11P52732 1056 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 ADCY1Q08828 1119 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 GRM7Q14831 915 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 NOLC1Q14978 699 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS35-207ENST00000568191 SEC23AQ15436 765 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 TIGD7Q6NT04 549 aaPredicted RBP4.3□□□□□ -1.72
VPS35-207ENST00000568191 CRIP3Q6Q6R5 217 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 LARP4Q71RC2 724 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS35-207ENST00000568191 OTOP1Q7RTM1 612 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 NPM2Q86SE8 214 aaKnown RBP4.3□□□□□ -1.72
VPS35-207ENST00000568191 SGMS1Q86VZ5 419 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 THEMISQ8N1K5 641 aaPredicted RBP4.3□□□□□ -1.72
VPS35-207ENST00000568191 CHST14Q8NCH0 376 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 DRC1Q96MC2 740 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 ZNF747Q9BV97 191 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 PLA2G12BQ9BX93 195 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 KIAA1683Q9H0B3 1180 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 ZSWIM4Q9H7M6 989 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 TRIM39Q9HCM9 518 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 ZKSCAN5Q9Y2L8 839 aa4.3□□□□□ -1.72
VPS35-207ENST00000568191 UBA6A0AVT1 1052 aaPredicted RBP4.29□□□□□ -1.72
VPS35-207ENST00000568191 SLC26A4O43511 780 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 HIBADHP31937 336 aaKnown RBP4.29□□□□□ -1.72
VPS35-207ENST00000568191 HMGA2P52926 109 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 ALDH6A1Q02252 535 aaKnown RBP4.29□□□□□ -1.72
VPS35-207ENST00000568191 FOXE3Q13461 319 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 R3HDM1Q15032 1099 aaKnown RBP4.29□□□□□ -1.72
VPS35-207ENST00000568191 DGKDQ16760 1214 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 USP39Q53GS9 565 aaKnown RBP4.29□□□□□ -1.72
VPS35-207ENST00000568191 TTC38Q5R3I4 469 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 CATSPEREQ5SY80 951 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 RNF207Q6ZRF8 634 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 FGD2Q7Z6J4 655 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 PASD1Q8IV76 773 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 LILRB2Q8N423 598 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 D2HGDHQ8N465 521 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 SHCBP1Q8NEM2 672 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 OR14K1Q8NGZ2 314 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 SORCS2Q96PQ0 1159 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 MPHOSPH9Q99550 1183 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 PLA2G3Q9NZ20 509 aa4.29□□□□□ -1.72
VPS35-207ENST00000568191 A0A1W2PRX2 142 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 PTPDC1A2A3K4 754 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 KCNA6P17658 529 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 MSX2P35548 267 aaPredicted RBP4.28□□□□□ -1.72
VPS35-207ENST00000568191 STAT5BP51692 787 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 BCAR1P56945 870 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 SLC6A3Q01959 620 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 CFAP100Q494V2 611 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 SLFN12LQ6IEE8 588 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 ZNF662Q6ZS27 426 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 C1orf210Q8IVY1 113 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 ZZZ3Q8IYH5 903 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 ANKRD35Q8N283 1001 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 UBXN4Q92575 508 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 RABGGTAQ92696 567 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 SLC7A6OSQ96CW6 309 aaPredicted RBP4.28□□□□□ -1.72
VPS35-207ENST00000568191 MAML3Q96JK9 1138 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 TUBGCP5Q96RT8 1024 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 SLC6A15Q9H2J7 730 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 IFT57Q9NWB7 429 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 KCMF1Q9P0J7 381 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 MAGEC2Q9UBF1 373 aaPredicted RBP4.28□□□□□ -1.72
VPS35-207ENST00000568191 DENND2AQ9ULE3 1009 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 HS3ST3A1Q9Y663 406 aa4.28□□□□□ -1.72
VPS35-207ENST00000568191 RASSF10A6NK89 507 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 RFPL3O75679 317 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 ZBTB48P10074 688 aaPredicted RBP4.27□□□□□ -1.73
VPS35-207ENST00000568191 MCM7P33993 719 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 ABHD18Q0P651 414 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 TBR1Q16650 682 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 MAN2A1Q16706 1144 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 PIK3R6Q5UE93 754 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 ABHD17CQ6PCB6 329 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 MAMDC4Q6UXC1 1216 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 GSPT2Q8IYD1 628 aaKnown RBP4.27□□□□□ -1.73
VPS35-207ENST00000568191 KIAA1958Q8N8K9 716 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 MRIQ9BWK5 157 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 INTS7Q9NVH2 962 aaKnown RBP4.27□□□□□ -1.73
VPS35-207ENST00000568191 GIT1Q9Y2X7 761 aa4.27□□□□□ -1.73
VPS35-207ENST00000568191 TNPO3Q9Y5L0 923 aaKnown RBP4.27□□□□□ -1.73
VPS35-207ENST00000568191 CAPN14A8MX76 684 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 MATN2O00339 956 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 GAS7O60861 476 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms