RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 PTPRAP18433 802 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 SNAP25P60880 206 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 IKQ13123 557 aaPredicted RBP14.47□□□□□ -0.09
VPS4A-204ENST00000566354 CDC37Q16543 378 aaPredicted RBP14.47□□□□□ -0.09
VPS4A-204ENST00000566354 ECM1Q16610 540 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 HYIQ5T013 277 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 RPAINQ86UA6 219 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 PNMA8AQ86V59 439 aaPredicted RBP14.47□□□□□ -0.09
VPS4A-204ENST00000566354 CCDC65Q8IXS2 484 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 C1orf131Q8NDD1 294 aaKnown RBP14.47□□□□□ -0.09
VPS4A-204ENST00000566354 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.47□□□□□ -0.096e-6■□□□□ 9
VPS4A-204ENST00000566354 WHAMMQ8TF30 809 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 IFT81Q8WYA0 676 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 CCDC43Q96MW1 224 aaKnown RBP14.47□□□□□ -0.09
VPS4A-204ENST00000566354 DDX25Q9UHL0 483 aaKnown RBP14.47□□□□□ -0.09
VPS4A-204ENST00000566354 KDM3AQ9Y4C1 1321 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 PNMA6FA0A0J9YX94 578 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 CES2O00748 559 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 MARCH6O60337 910 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 FTCDO95954 541 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 KRT14P02533 472 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 KLHL30Q0D2K2 578 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 SPP2Q13103 211 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 KIAA0753Q2KHM9 967 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 MOB2Q70IA6 237 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 B4GALNT4Q76KP1 1039 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 HAS1Q92839 578 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 INPP4AQ96PE3 977 aaPredicted RBP14.46□□□□□ -0.09
VPS4A-204ENST00000566354 RRAGCQ9HB90 399 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 PICK1Q9NRD5 415 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 GINM1Q9NU53 330 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 PCDHA12Q9UN75 941 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 CLEC11AQ9Y240 323 aa14.46□□□□□ -0.09
VPS4A-204ENST00000566354 A0A087X0T9 212 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 BTNL10A8MVZ5 291 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 KIF3CO14782 793 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 FAM153BP0C7A2 387 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 FAM228BP0C875 321 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 GCFC2P16383 781 aaKnown RBP14.46□□□□□ -0.1
VPS4A-204ENST00000566354 MTMR2Q13614 643 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 FAM153CQ494X1 144 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 C10orf76Q5T2E6 689 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 MAP1SQ66K74 1059 aaPredicted RBP14.46□□□□□ -0.1
VPS4A-204ENST00000566354 KDM7AQ6ZMT4 941 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 MICALL1Q8N3F8 863 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 GPATCH11Q8N954 259 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 EIF1ADQ8N9N8 165 aaKnown RBP14.46□□□□□ -0.1
VPS4A-204ENST00000566354 KRT12Q99456 494 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.46□□□□□ -0.1
VPS4A-204ENST00000566354 FAM153AQ9UHL3 310 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 PCDHA2Q9Y5H9 948 aa14.46□□□□□ -0.1
VPS4A-204ENST00000566354 PHIPQ8WWQ0 1821 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 OTOFQ9HC10 1997 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 SMCHD1A6NHR9 2005 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 ZNF233A6NK53 670 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 ZEB2O60315 1214 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 ERLIN2O94905 339 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 CLK2P49760 499 aaKnown RBP14.45□□□□□ -0.1
VPS4A-204ENST00000566354 MRPL12P52815 198 aaKnown RBP14.45□□□□□ -0.1
VPS4A-204ENST00000566354 TNNC1P63316 161 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 RAPGEF1Q13905 1077 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 SPATS2Q86XZ4 545 aaKnown RBP14.45□□□□□ -0.1
VPS4A-204ENST00000566354 NAP1L4Q99733 375 aaKnown RBP14.45□□□□□ -0.1
VPS4A-204ENST00000566354 KIAA1683Q9H0B3 1180 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 ADAMTS1Q9UHI8 967 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 ZHX2Q9Y6X8 837 aa14.45□□□□□ -0.1
VPS4A-204ENST00000566354 NDUFAB1O14561 156 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 ZBTB5O15062 677 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 SLC26A4O43511 780 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 PPP1R12BO60237 982 aaPredicted RBP14.44□□□□□ -0.1
VPS4A-204ENST00000566354 VGLL4Q14135 290 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 ASIC2Q16515 512 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 QRICH1Q2TAL8 776 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 SYDE2Q5VT97 1194 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 TTC19Q6DKK2 380 aaPredicted RBP14.44□□□□□ -0.1
VPS4A-204ENST00000566354 ZC3H3Q8IXZ2 948 aaKnown RBP14.44□□□□□ -0.1
VPS4A-204ENST00000566354 OTUD6BQ8N6M0 293 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 USP38Q8NB14 1042 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 ZNF526Q8TF50 670 aaPredicted RBP14.44□□□□□ -0.1
VPS4A-204ENST00000566354 TAF4BQ92750 862 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 CUL5Q93034 780 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 FBXO28Q9NVF7 368 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 ATXN2Q99700 1313 aaKnown RBP14.44□□□□□ -0.1
VPS4A-204ENST00000566354 ESYT3A0FGR9 886 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 ZSCAN5CA6NGD5 496 aaPredicted RBP14.44□□□□□ -0.1
VPS4A-204ENST00000566354 SSBP05455 408 aaKnown RBP eCLIP14.44□□□□□ -0.1
VPS4A-204ENST00000566354 STAT2P52630 851 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 PDCLQ13371 301 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 ADAM9Q13443 819 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 EDRF1Q3B7T1 1238 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 HERC4Q5GLZ8 1057 aaPredicted RBP14.44□□□□□ -0.1
VPS4A-204ENST00000566354 KCTD16Q68DU8 428 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 BTNL9Q6UXG8 535 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 CASKIN2Q8WXE0 1202 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 PIK3R5Q8WYR1 880 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 KCTD10Q9H3F6 313 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 EMILIN3Q9NT22 766 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 TMEM59LQ9UK28 342 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 PRR12Q9ULL5 1215 aa14.44□□□□□ -0.1
VPS4A-204ENST00000566354 BZW2Q9Y6E2 419 aaKnown RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms