RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SIP14410 1827 aa23.32■■□□□ 1.32
CLN3-219ENST00000565778 DENND3A2RUS2 1198 aa23.32■■□□□ 1.32
CLN3-219ENST00000565778 CTNNB1P35222 781 aa23.32■■□□□ 1.32
CLN3-219ENST00000565778 BMPR1AP36894 532 aa23.32■■□□□ 1.32
CLN3-219ENST00000565778 FOSBP53539 338 aa23.32■■□□□ 1.32
CLN3-219ENST00000565778 NR5A1Q13285 461 aa23.32■■□□□ 1.32
CLN3-219ENST00000565778 TRIM29Q14134 588 aa23.32■■□□□ 1.32
CLN3-219ENST00000565778 MTERF2Q49AM1 385 aa23.32■■□□□ 1.32
CLN3-219ENST00000565778 FAM43BQ6ZT52 329 aaPredicted RBP23.32■■□□□ 1.32
CLN3-219ENST00000565778 ADAM2Q99965 735 aa23.32■■□□□ 1.32
CLN3-219ENST00000565778 SEPT9Q9UHD8 586 aaPredicted RBP23.32■■□□□ 1.32
CLN3-219ENST00000565778 PCDHB7Q9Y5E2 793 aa23.32■■□□□ 1.32
CLN3-219ENST00000565778 MYH9P35579 1960 aaKnown RBP23.31■■□□□ 1.32
CLN3-219ENST00000565778 JAK2O60674 1132 aa23.31■■□□□ 1.32
CLN3-219ENST00000565778 BAG4O95429 457 aaKnown RBP23.31■■□□□ 1.32
CLN3-219ENST00000565778 EARS2Q5JPH6 523 aaKnown RBP23.31■■□□□ 1.32
CLN3-219ENST00000565778 ZNF710Q8N1W2 664 aa23.31■■□□□ 1.32
CLN3-219ENST00000565778 BANK1Q8NDB2 785 aa23.31■■□□□ 1.32
CLN3-219ENST00000565778 MRPL38Q96DV4 380 aaKnown RBP23.31■■□□□ 1.32
CLN3-219ENST00000565778 NIFKQ9BYG3 293 aaKnown RBP23.31■■□□□ 1.32
CLN3-219ENST00000565778 KCNMB3Q9NPA1 279 aa23.31■■□□□ 1.32
CLN3-219ENST00000565778 LIMCH1Q9UPQ0 1083 aa23.31■■□□□ 1.32
CLN3-219ENST00000565778 RWDD3Q9Y3V2 267 aa23.31■■□□□ 1.32
CLN3-219ENST00000565778 EML1O00423 815 aa23.3■■□□□ 1.32
CLN3-219ENST00000565778 MGEA5O60502 916 aa23.3■■□□□ 1.32
CLN3-219ENST00000565778 RB1P06400 928 aa23.3■■□□□ 1.32
CLN3-219ENST00000565778 SARSP49591 514 aaKnown RBP23.3■■□□□ 1.32
CLN3-219ENST00000565778 PSMC5P62195 406 aa23.3■■□□□ 1.32
CLN3-219ENST00000565778 TARBP2Q15633 366 aaKnown RBP23.3■■□□□ 1.32
CLN3-219ENST00000565778 FAM228AQ86W67 206 aa23.3■■□□□ 1.32
CLN3-219ENST00000565778 CRIPAKQ8N1N5 446 aa23.3■■□□□ 1.32
CLN3-219ENST00000565778 LINC01465Q8N7H1 131 aa23.3■■□□□ 1.32
CLN3-219ENST00000565778 ZNF668Q96K58 619 aaPredicted RBP23.3■■□□□ 1.32
CLN3-219ENST00000565778 SH2D3AQ9BRG2 576 aa23.3■■□□□ 1.32
CLN3-219ENST00000565778 RGS18Q9NS28 235 aa23.3■■□□□ 1.32
CLN3-219ENST00000565778 RNF216Q9NWF9 866 aaPredicted RBP23.3■■□□□ 1.32
CLN3-219ENST00000565778 TMEM150BA6NC51 233 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 FAM205CA6NFA0 338 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 TBX3O15119 743 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 STBD1O95210 358 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 DNM2P50570 870 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 PPP2R5CQ13362 524 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 PAN2Q504Q3 1202 aaKnown RBP23.29■■□□□ 1.32
CLN3-219ENST00000565778 SLC24A5Q71RS6 500 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 EVPLQ92817 2033 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 HAS1Q92839 578 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 SCLT1Q96NL6 688 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 ADAMTS10Q9H324 1103 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 RC3H2Q9HBD1 1191 aaKnown RBP23.29■■□□□ 1.32
CLN3-219ENST00000565778 C1orf112Q9NSG2 853 aa23.29■■□□□ 1.32
CLN3-219ENST00000565778 BTBD18B2RXH4 712 aa23.28■■□□□ 1.32
CLN3-219ENST00000565778 DKC1O60832 514 aaKnown RBP eCLIP23.28■■□□□ 1.32
CLN3-219ENST00000565778 MMP1P03956 469 aa23.28■■□□□ 1.32
CLN3-219ENST00000565778 QARSP47897 775 aaKnown RBP23.28■■□□□ 1.32
CLN3-219ENST00000565778 CMTR2Q8IYT2 770 aaKnown RBP23.28■■□□□ 1.32
CLN3-219ENST00000565778 ADAMTS19Q8TE59 1207 aa23.28■■□□□ 1.32
CLN3-219ENST00000565778 CLP1Q92989 425 aaKnown RBP23.28■■□□□ 1.32
CLN3-219ENST00000565778 VAV3Q9UKW4 847 aa23.28■■□□□ 1.32
CLN3-219ENST00000565778 TTC3P53804 2025 aa23.27■■□□□ 1.32
CLN3-219ENST00000565778 C5orf67F2Z3F1 127 aa23.27■■□□□ 1.32
CLN3-219ENST00000565778 P4HBP07237 508 aaKnown RBP23.27■■□□□ 1.32
CLN3-219ENST00000565778 BMP1P13497 986 aa23.27■■□□□ 1.32
CLN3-219ENST00000565778 ZSCAN20P17040 1043 aaPredicted RBP23.27■■□□□ 1.32
CLN3-219ENST00000565778 EIF4BP23588 611 aaKnown RBP23.27■■□□□ 1.32
CLN3-219ENST00000565778 KCNQ1P51787 676 aa23.27■■□□□ 1.32
CLN3-219ENST00000565778 POTEDQ86YR6 584 aa23.27■■□□□ 1.32
CLN3-219ENST00000565778 CCDC83Q8IWF9 413 aa23.27■■□□□ 1.32
CLN3-219ENST00000565778 DIS3L2Q8IYB7 885 aaKnown RBP23.27■■□□□ 1.32
CLN3-219ENST00000565778 SLFN12Q8IYM2 578 aa23.27■■□□□ 1.32
CLN3-219ENST00000565778 NLRP7Q8WX94 980 aa23.27■■□□□ 1.32
CLN3-219ENST00000565778 TNFRSF25Q93038 417 aa23.27■■□□□ 1.32
CLN3-219ENST00000565778 C11orf84Q9BUA3 381 aaPredicted RBP23.27■■□□□ 1.32
CLN3-219ENST00000565778 C9IYK1 514 aa23.26■■□□□ 1.31
CLN3-219ENST00000565778 LINC00271P0C7V0 271 aa23.26■■□□□ 1.31
CLN3-219ENST00000565778 GATMP50440 423 aa23.26■■□□□ 1.31
CLN3-219ENST00000565778 GPC3P51654 580 aa23.26■■□□□ 1.31
CLN3-219ENST00000565778 CDC42EP1Q00587 391 aa23.26■■□□□ 1.31
CLN3-219ENST00000565778 EPHA7Q15375 998 aa23.26■■□□□ 1.31
CLN3-219ENST00000565778 C8orf34Q49A92 452 aa23.26■■□□□ 1.31
CLN3-219ENST00000565778 NCAPH2Q6IBW4 605 aa23.26■■□□□ 1.31
CLN3-219ENST00000565778 ANO5Q75V66 913 aa23.26■■□□□ 1.31
CLN3-219ENST00000565778 MRPL42Q9Y6G3 142 aaKnown RBP23.26■■□□□ 1.31
CLN3-219ENST00000565778 REV3LO60673 3130 aa23.26■■□□□ 1.31
CLN3-219ENST00000565778 COL4A4P53420 1690 aaPredicted RBP23.25■■□□□ 1.31
CLN3-219ENST00000565778 ST3GAL1Q11201 340 aa23.25■■□□□ 1.31
CLN3-219ENST00000565778 DRP2Q13474 957 aa23.25■■□□□ 1.31
CLN3-219ENST00000565778 ZSCAN31Q96LW9 406 aaPredicted RBP23.25■■□□□ 1.31
CLN3-219ENST00000565778 CEP89Q96ST8 783 aa23.25■■□□□ 1.31
CLN3-219ENST00000565778 UHRF1Q96T88 793 aaPredicted RBP23.25■■□□□ 1.31
CLN3-219ENST00000565778 JPH2Q9BR39 696 aaPredicted RBP23.25■■□□□ 1.31
CLN3-219ENST00000565778 PLVAPQ9BX97 442 aa23.25■■□□□ 1.31
CLN3-219ENST00000565778 ATP6V0A4Q9HBG4 840 aa23.25■■□□□ 1.31
CLN3-219ENST00000565778 SUCLA2Q9P2R7 463 aaPredicted RBP23.25■■□□□ 1.31
CLN3-219ENST00000565778 LOXHD1Q8IVV2 1947 aa23.25■■□□□ 1.31
CLN3-219ENST00000565778 VCANP13611 3396 aa23.24■■□□□ 1.31
CLN3-219ENST00000565778 GRM6O15303 877 aa23.24■■□□□ 1.31
CLN3-219ENST00000565778 MAFO75444 373 aaPredicted RBP23.24■■□□□ 1.31
CLN3-219ENST00000565778 DARSP14868 501 aaKnown RBP23.24■■□□□ 1.31
CLN3-219ENST00000565778 FAM189BP81408 668 aa23.24■■□□□ 1.31
CLN3-219ENST00000565778 GUCY1B3Q02153 619 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms