RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 TIMP1P01033 207 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 CHRNA1P02708 482 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 VTNP04004 478 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 PLCG1P19174 1290 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 THPOP40225 353 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 KRT85P78386 507 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 MDM2Q00987 491 aaPredicted RBP10.93□□□□□ -0.66
CLK3-208ENST00000562626 RBL2Q08999 1139 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 MGAT3Q09327 533 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 TPRNQ4KMQ1 711 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 KRT79Q5XKE5 535 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 HAUS3Q68CZ6 603 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 EFCAB12Q6NXP0 572 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 C16orf59Q7L2K0 433 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 KSR1Q8IVT5 923 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 CEP170P1Q96L14 293 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 AK8Q96MA6 479 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 RUSC1Q9BVN2 902 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 PANK2Q9BZ23 570 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 CCSER1Q9C0I3 900 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 BHMT2Q9H2M3 363 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 DHX33Q9H6R0 707 aaKnown RBP10.93□□□□□ -0.66
CLK3-208ENST00000562626 GPRC5CQ9NQ84 441 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 NRBP2Q9NSY0 501 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 ANKEF1Q9NU02 776 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 NOD1Q9Y239 953 aa10.93□□□□□ -0.66
CLK3-208ENST00000562626 TDRD15B5MCY1 1934 aaKnown RBP10.92□□□□□ -0.66
CLK3-208ENST00000562626 ATG2AQ2TAZ0 1938 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 SMIM35A0A1B0GVV1 85 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 USO1O60763 962 aaKnown RBP10.92□□□□□ -0.66
CLK3-208ENST00000562626 CUTAO60888 179 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 NBNO60934 754 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 IQCF3P0C7M6 154 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 CSF2RAP15509 400 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 RAG1P15918 1043 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 UBA7P41226 1012 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 MAGEA10P43363 369 aaPredicted RBP10.92□□□□□ -0.66
CLK3-208ENST00000562626 ME1P48163 572 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 TBC1D8BQ0IIM8 1120 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 EMC2Q15006 297 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 ATL3Q6DD88 541 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 METTL13Q8N6R0 699 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 TMEM40Q8WWA1 233 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 BSNDQ8WZ55 320 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 TMEM143Q96AN5 459 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 SPATA32Q96LK8 384 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 NACC1Q96RE7 527 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 RAB34Q9BZG1 259 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 SUGCTQ9HAC7 445 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 DBR1Q9UK59 544 aaKnown RBP10.92□□□□□ -0.66
CLK3-208ENST00000562626 CFAP45Q9UL16 551 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 CDY2AQ9Y6F7 541 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 CITO14578 2027 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 COL4A6Q14031 1691 aa10.92□□□□□ -0.66
CLK3-208ENST00000562626 NPHP3-ACAD11A0A0J9YXS1 232 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 PITPNM1O00562 1244 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 DKC1O60832 514 aaKnown RBP eCLIP10.91□□□□□ -0.66
CLK3-208ENST00000562626 EYA4O95677 639 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 ACRP10323 421 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 GNAT1P11488 350 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 SLC12A3P55017 1021 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 MRPS6P82932 125 aaKnown RBP10.91□□□□□ -0.66
CLK3-208ENST00000562626 MCM6Q14566 821 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 E2F4Q16254 413 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 ARSHQ5FYA8 562 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 FAM26DQ5JW98 314 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 RESP18Q5W5W9 173 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 MFSD5Q6N075 450 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 PADI6Q6TGC4 694 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 LRRC8DQ7L1W4 858 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 MAEAQ7L5Y9 396 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 DAW1Q8N136 415 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 PDILTQ8N807 584 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 KCNG4Q8TDN1 519 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 ASAP3Q8TDY4 903 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 GOLPH3LQ9H4A5 285 aa10.91□□□□□ -0.66
CLK3-208ENST00000562626 SZT2Q5T011 3432 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 KDM3AQ9Y4C1 1321 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 A0A1B0GVL5 298 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 RSPH10B2B2RC85 870 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 GADD45BO75293 160 aaPredicted RBP10.9□□□□□ -0.66
CLK3-208ENST00000562626 GPR32O75388 356 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 CSDE1O75534 798 aaKnown RBP10.9□□□□□ -0.66
CLK3-208ENST00000562626 PLA2G4BP0C869 781 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 RSPH10BP0C881 870 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 XRCC6P12956 609 aaKnown RBP eCLIP10.9□□□□□ -0.66
CLK3-208ENST00000562626 SELPP16109 830 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 MUTP22033 750 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 POLGP54098 1239 aaPredicted RBP10.9□□□□□ -0.66
CLK3-208ENST00000562626 CACNB1Q02641 598 aaPredicted RBP10.9□□□□□ -0.66
CLK3-208ENST00000562626 RAD51AP2Q09MP3 1159 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 MAPK7Q13164 816 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 BFSP2Q13515 415 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 DHX8Q14562 1220 aaKnown RBP10.9□□□□□ -0.66
CLK3-208ENST00000562626 KIZQ2M2Z5 673 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 RINT1Q6NUQ1 792 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 TAF2Q6P1X5 1199 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 C1orf186Q6ZWK4 172 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 OTUD6AQ7L8S5 288 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 DEFB128Q7Z7B8 93 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms