RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 SAFBQ15424 915 aaKnown RBP eCLIP17.6■□□□□ 0.41
VPS39-203ENST00000561797 XKR3Q5GH77 459 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 NCAPH2Q6IBW4 605 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 FAM184AQ8NB25 1140 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 SP7Q8TDD2 431 aaPredicted RBP17.6■□□□□ 0.41
VPS39-203ENST00000561797 ZNF668Q96K58 619 aaPredicted RBP17.6■□□□□ 0.41
VPS39-203ENST00000561797 MAP7D2Q96T17 732 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 FTHL17Q9BXU8 183 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 NIFKQ9BYG3 293 aaKnown RBP17.6■□□□□ 0.41
VPS39-203ENST00000561797 MTCH2Q9Y6C9 303 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 ATG2AQ2TAZ0 1938 aa17.59■□□□□ 0.41
VPS39-203ENST00000561797 WNT7AO00755 349 aa17.59■□□□□ 0.41
VPS39-203ENST00000561797 GPR32O75388 356 aa17.59■□□□□ 0.41
VPS39-203ENST00000561797 NLRP11P59045 1033 aaKnown RBP17.59■□□□□ 0.41
VPS39-203ENST00000561797 TARBP2Q15633 366 aaKnown RBP17.59■□□□□ 0.41
VPS39-203ENST00000561797 SLFN12Q8IYM2 578 aa17.59■□□□□ 0.41
VPS39-203ENST00000561797 LINC01465Q8N7H1 131 aa17.59■□□□□ 0.41
VPS39-203ENST00000561797 FBXO22Q8NEZ5 403 aa17.59■□□□□ 0.41
VPS39-203ENST00000561797 TMX1Q9H3N1 280 aa17.59■□□□□ 0.41
VPS39-203ENST00000561797 ERVK-5Q9HDB9 667 aa17.59■□□□□ 0.41
VPS39-203ENST00000561797 CHD7Q9P2D1 2997 aa17.58■□□□□ 0.41
VPS39-203ENST00000561797 LPXNO60711 386 aa17.58■□□□□ 0.4
VPS39-203ENST00000561797 P4HBP07237 508 aaKnown RBP17.58■□□□□ 0.4
VPS39-203ENST00000561797 QARSP47897 775 aaKnown RBP17.58■□□□□ 0.4
VPS39-203ENST00000561797 HMGN5P82970 282 aaKnown RBP17.58■□□□□ 0.4
VPS39-203ENST00000561797 EPHA7Q15375 998 aa17.58■□□□□ 0.4
VPS39-203ENST00000561797 CALCRLQ16602 461 aa17.58■□□□□ 0.4
VPS39-203ENST00000561797 ODR4Q5SWX8 454 aa17.58■□□□□ 0.4
VPS39-203ENST00000561797 PLA2G4FQ68DD2 849 aa17.58■□□□□ 0.4
VPS39-203ENST00000561797 ST3GAL5Q9UNP4 418 aa17.58■□□□□ 0.4
VPS39-203ENST00000561797 COL4A6Q14031 1691 aa17.58■□□□□ 0.4
VPS39-203ENST00000561797 DLL1O00548 723 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 GPR182O15218 404 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 ST18O60284 1047 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 MGEA5O60502 916 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 POU3F3P20264 500 aaPredicted RBP17.57■□□□□ 0.4
VPS39-203ENST00000561797 TXKP42681 527 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 DRP2Q13474 957 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 SKIV2LQ15477 1246 aaKnown RBP17.57■□□□□ 0.4
VPS39-203ENST00000561797 ANO5Q75V66 913 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 FAM228AQ86W67 206 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 FIBCD1Q8N539 461 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 DYDC2Q96IM9 177 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 SCLT1Q96NL6 688 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 CEP89Q96ST8 783 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 TSPYL2Q9H2G4 693 aaPredicted RBP17.57■□□□□ 0.4
VPS39-203ENST00000561797 RGL1Q9NZL6 768 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 WRAP73Q9P2S5 460 aaPredicted RBP17.57■□□□□ 0.4
VPS39-203ENST00000561797 LRFN2Q9ULH4 789 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 PCDHA12Q9UN75 941 aa17.57■□□□□ 0.4
VPS39-203ENST00000561797 TCF20Q9UGU0 1960 aaKnown RBP17.57■□□□□ 0.4
VPS39-203ENST00000561797 DENND3A2RUS2 1198 aa17.56■□□□□ 0.4
VPS39-203ENST00000561797 NEMFO60524 1076 aa17.56■□□□□ 0.4
VPS39-203ENST00000561797 DKC1O60832 514 aaKnown RBP eCLIP17.56■□□□□ 0.4
VPS39-203ENST00000561797 DGKIO75912 1065 aa17.56■□□□□ 0.4
VPS39-203ENST00000561797 NPEPPSP55786 919 aa17.56■□□□□ 0.4
VPS39-203ENST00000561797 SPIRE1Q08AE8 756 aa17.56■□□□□ 0.4
VPS39-203ENST00000561797 GNL2Q13823 731 aaKnown RBP17.56■□□□□ 0.4
VPS39-203ENST00000561797 CTTNQ14247 550 aaKnown RBP17.56■□□□□ 0.4
VPS39-203ENST00000561797 EPC2Q52LR7 807 aa17.56■□□□□ 0.4
VPS39-203ENST00000561797 NPAS4Q8IUM7 802 aa17.56■□□□□ 0.4
VPS39-203ENST00000561797 TMEM192Q8IY95 271 aa17.56■□□□□ 0.4
VPS39-203ENST00000561797 ADAM2Q99965 735 aa17.56■□□□□ 0.4
VPS39-203ENST00000561797 ADAMTS10Q9H324 1103 aa17.56■□□□□ 0.4
VPS39-203ENST00000561797 ADGRA3Q8IWK6 1321 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 STAG3L1P0CL83 205 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 MCM7P33993 719 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 DNM2P50570 870 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 GPC3P51654 580 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 CYP4A11Q02928 519 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 BTG3Q14201 252 aaPredicted RBP17.55■□□□□ 0.4
VPS39-203ENST00000561797 PAN2Q504Q3 1202 aaKnown RBP17.55■□□□□ 0.4
VPS39-203ENST00000561797 TPH2Q8IWU9 490 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 ZNF579Q8NAF0 562 aaKnown RBP17.55■□□□□ 0.4
VPS39-203ENST00000561797 FBXO18Q8NFZ0 1043 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 NLRP7Q8WX94 980 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 ZNF689Q96CS4 500 aaPredicted RBP17.55■□□□□ 0.4
VPS39-203ENST00000561797 SAMD11Q96NU1 681 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 LXNQ9BS40 222 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 TTC12Q9H892 705 aaPredicted RBP17.55■□□□□ 0.4
VPS39-203ENST00000561797 CYP26B1Q9NR63 512 aa17.55■□□□□ 0.4
VPS39-203ENST00000561797 TRANK1O15050 2925 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 PLXNA4Q9HCM2 1894 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 EYSQ5T1H1 3165 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 IGKV6-21A0A0C4DH24 114 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 MAFO75444 373 aaPredicted RBP17.54■□□□□ 0.4
VPS39-203ENST00000561797 FGFR4P22455 802 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 EIF4BP23588 611 aaKnown RBP17.54■□□□□ 0.4
VPS39-203ENST00000561797 CTNNB1P35222 781 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 SARSP49591 514 aaKnown RBP17.54■□□□□ 0.4
VPS39-203ENST00000561797 GATMP50440 423 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 GPM6BQ13491 265 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 ZNF174Q15697 407 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 C4orf19Q8IY42 314 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 CRIPAKQ8N1N5 446 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 CEP170P1Q96L14 293 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 TMEM60Q9H2L4 133 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 FOXP1Q9H334 677 aaPredicted RBP17.54■□□□□ 0.4
VPS39-203ENST00000561797 RC3H2Q9HBD1 1191 aaKnown RBP17.54■□□□□ 0.4
VPS39-203ENST00000561797 RGS18Q9NS28 235 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms