RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 ATP7AQ04656 1500 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 EFCAB6Q5THR3 1501 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 KRTAP23-1A1A580 65 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 ARHGAP6O43182 974 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 IL18BPO95998 194 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 ERBB2P04626 1255 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 SCG5P05408 212 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 ITGAVP06756 1048 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 KCNJ6P48051 423 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 KRTAP10-11P60412 298 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 CYP4F3Q08477 520 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 DUSP8Q13202 625 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 TOP3AQ13472 1001 aaPredicted RBP3.26□□□□□ -1.89
SPG11-223ENST00000560858 RALBP1Q15311 655 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 CD276Q5ZPR3 534 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 Q6ZPA2 131 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 FAM9BQ8IZU0 186 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 D2HGDHQ8N465 521 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 PIP4K2CQ8TBX8 421 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 PNISRQ8TF01 805 aaKnown RBP3.26□□□□□ -1.89
SPG11-223ENST00000560858 ZNF764Q96H86 408 aaPredicted RBP3.26□□□□□ -1.89
SPG11-223ENST00000560858 ANKRD26Q9UPS8 1709 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 PPRC1Q5VV67 1664 aaKnown RBP3.26□□□□□ -1.89
SPG11-223ENST00000560858 QRICH2Q9H0J4 1663 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 PTPRTO14522 1441 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 PIK3C2GO75747 1445 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 SCAPERQ9BY12 1400 aa3.26□□□□□ -1.89
SPG11-223ENST00000560858 CFAP74Q9C0B2 1584 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 SETBP1Q9Y6X0 1596 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 WASHC2CQ9Y4E1 1318 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 ADGRB3O60242 1522 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 ASXL1Q8IXJ9 1541 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 ZNF839A8K0R7 811 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 CAPN14A8MX76 684 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 MATN2O00339 956 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 CDK4P11802 303 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 LCP1P13796 627 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 CD38P28907 300 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 PTGS2P35354 604 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 ZNF76P36508 570 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 CASP7P55210 303 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 C21orf58P58505 322 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 TUSC3Q13454 348 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 MRPL58Q14197 206 aaKnown RBP3.25□□□□□ -1.89
SPG11-223ENST00000560858 RRP1BQ14684 758 aaKnown RBP3.25□□□□□ -1.89
SPG11-223ENST00000560858 NCAPHQ15003 741 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 SYCE2Q6PIF2 218 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 ZNF662Q6ZS27 426 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 USP30Q70CQ3 517 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 BTN2A2Q8WVV5 523 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 JAM3Q9BX67 310 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 PDGFDQ9GZP0 370 aaPredicted RBP3.25□□□□□ -1.89
SPG11-223ENST00000560858 LRP2BPQ9P2M1 347 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 ZNHIT2Q9UHR6 403 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 RTEL1-TNFRSF6BF6WH68 1400 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 KIDINS220Q9ULH0 1771 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 HECW2Q9P2P5 1572 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 DISP3Q9P2K9 1392 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 NPC1L1Q9UHC9 1359 aa3.25□□□□□ -1.89
SPG11-223ENST00000560858 ARHGEF28Q8N1W1 1705 aaKnown RBP3.24□□□□□ -1.89
SPG11-223ENST00000560858 LMTK2Q8IWU2 1503 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 SCAF11Q99590 1463 aaKnown RBP3.24□□□□□ -1.89
SPG11-223ENST00000560858 NRXN1Q9ULB1 1477 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 PIK3C2BO00750 1634 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 LMNAP02545 664 aaKnown RBP3.24□□□□□ -1.89
SPG11-223ENST00000560858 ITGB6P18564 788 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 ETV4P43268 484 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 RRP1P56182 461 aaKnown RBP3.24□□□□□ -1.89
SPG11-223ENST00000560858 KRTAP10-9P60411 292 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 SPIRE1Q08AE8 756 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 WDR72Q3MJ13 1102 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 EPHA10Q5JZY3 1008 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 RBM12BQ8IXT5 1001 aaKnown RBP3.24□□□□□ -1.89
SPG11-223ENST00000560858 KREMEN2Q8NCW0 462 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 HAS1Q92839 578 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 TRAIPQ9BWF2 469 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 GINM1Q9NU53 330 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 PACSIN3Q9UKS6 424 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 EFR3BQ9Y2G0 817 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 NOP58Q9Y2X3 529 aaKnown RBP3.24□□□□□ -1.89
SPG11-223ENST00000560858 PLCH2O75038 1416 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 ADGRB2O60241 1585 aa3.24□□□□□ -1.89
SPG11-223ENST00000560858 CLTCQ00610 1675 aaKnown RBP3.24□□□□□ -1.89
SPG11-223ENST00000560858 IQSEC2Q5JU85 1478 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 ST20-MTHFSA0A0A6YYL1 179 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 PLEKHD1A6NEE1 506 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 ZAR1LA6NP61 321 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 HMGCRP04035 888 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 PDE6AP16499 860 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 SOX9P48436 509 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 CNGB1Q14028 1251 aaPredicted RBP3.23□□□□□ -1.89
SPG11-223ENST00000560858 PRSS53Q2L4Q9 553 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 ZNF394Q53GI3 561 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 MBNL2Q5VZF2 373 aaKnown RBP3.23□□□□□ -1.89
SPG11-223ENST00000560858 ERICH6Q7L0X2 663 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 OTOP3Q7RTS5 596 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.23□□□□□ -1.89
SPG11-223ENST00000560858 ANKRD35Q8N283 1001 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 GPR150Q8NGU9 434 aa3.23□□□□□ -1.89
SPG11-223ENST00000560858 CPLX3Q8WVH0 158 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms