RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 FAM228AQ86W67 206 aa11.53□□□□□ -0.56
LDLR-214ENST00000560628 DAGLBQ8NCG7 672 aa11.53□□□□□ -0.56
LDLR-214ENST00000560628 SH2D3AQ9BRG2 576 aa11.53□□□□□ -0.56
LDLR-214ENST00000560628 IGFLR1Q9H665 355 aa11.53□□□□□ -0.56
LDLR-214ENST00000560628 RGS18Q9NS28 235 aa11.53□□□□□ -0.56
LDLR-214ENST00000560628 DDX25Q9UHL0 483 aaKnown RBP11.53□□□□□ -0.56
LDLR-214ENST00000560628 PLAGL2Q9UPG8 496 aa11.53□□□□□ -0.56
LDLR-214ENST00000560628 TRANK1O15050 2925 aa11.53□□□□□ -0.56
LDLR-214ENST00000560628 EVPLQ92817 2033 aa11.52□□□□□ -0.56
LDLR-214ENST00000560628 SPTBN5Q9NRC6 3674 aaKnown RBP11.52□□□□□ -0.56
LDLR-214ENST00000560628 TBKBP1A7MCY6 615 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 DDX11L8A8MPP1 907 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 C9IYK1 514 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 PFKFB2O60825 505 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 CDKL5O76039 1030 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 DNAJB1P25685 340 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 TMOD1P28289 359 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 GTF2F1P35269 517 aaKnown RBP eCLIP11.52□□□□□ -0.57
LDLR-214ENST00000560628 AK2P54819 239 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 LETM2Q2VYF4 491 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 MTERF2Q49AM1 385 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 SPOUT1Q5T280 376 aaKnown RBP11.52□□□□□ -0.57
LDLR-214ENST00000560628 GALNT17Q6IS24 598 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 PTCRAQ6ISU1 281 aaPredicted RBP11.52□□□□□ -0.57
LDLR-214ENST00000560628 SLC24A5Q71RS6 500 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 KRT25Q7Z3Z0 450 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 LINC01465Q8N7H1 131 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 NECAB1Q8N987 351 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 KLHL23Q8NBE8 558 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 ETNPPLQ8TBG4 499 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 SPPL3Q8TCT6 385 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 OXER1Q8TDS5 423 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 PABPC5Q96DU9 382 aaKnown RBP11.52□□□□□ -0.57
LDLR-214ENST00000560628 MAP7D2Q96T17 732 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 PHF20Q9BVI0 1012 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 PLVAPQ9BX97 442 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 LMAN2LQ9H0V9 348 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 ADAMTS10Q9H324 1103 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 EPHX3Q9H6B9 360 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 CD320Q9NPF0 282 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 C1orf112Q9NSG2 853 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 CLDND1Q9NY35 253 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 ORC3Q9UBD5 711 aaPredicted RBP11.52□□□□□ -0.57
LDLR-214ENST00000560628 BRWD1Q9NSI6 2320 aa11.52□□□□□ -0.57
LDLR-214ENST00000560628 CCDC194A0A1B0GVG4 234 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 EML1O00423 815 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 SLC37A4O43826 429 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 CSDE1O75534 798 aaKnown RBP11.51□□□□□ -0.57
LDLR-214ENST00000560628 STBD1O95210 358 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 CTDNEP1O95476 244 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 ITGB1P05556 798 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 FGFR1P11362 822 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 IL9P15248 144 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 FGFR4P22455 802 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 FAM189BP81408 668 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 TBC1D8BQ0IIM8 1120 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 HYAL1Q12794 435 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 DRP2Q13474 957 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 CAMK1Q14012 370 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 DSC3Q14574 896 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 TARBP2Q15633 366 aaKnown RBP11.51□□□□□ -0.57
LDLR-214ENST00000560628 B3GNT9Q6UX72 402 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 RDM1Q8NG50 284 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 NEK9Q8TD19 979 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 KHSRPQ92945 711 aaKnown RBP eCLIP11.51□□□□□ -0.57
LDLR-214ENST00000560628 MBOAT7Q96N66 472 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 SCLT1Q96NL6 688 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 ATP6V0A4Q9HBG4 840 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 HCSTQ9UBK5 93 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 SEPT9Q9UHD8 586 aaPredicted RBP11.51□□□□□ -0.57
LDLR-214ENST00000560628 RAPGEFL1Q9UHV5 662 aa11.51□□□□□ -0.57
LDLR-214ENST00000560628 LOXHD1Q8IVV2 1947 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 MYH9P35579 1960 aaKnown RBP11.5□□□□□ -0.57
LDLR-214ENST00000560628 GRXCR2A6NFK2 248 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 LINC01565O15544 149 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 MMP1P03956 469 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 XBP1P17861 261 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 COL9A1P20849 921 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 EIF4BP23588 611 aaKnown RBP11.5□□□□□ -0.57
LDLR-214ENST00000560628 IRS1P35568 1242 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 LTBRP36941 435 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 GPC3P51654 580 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 ANAPC15P60006 121 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 DLX2Q07687 328 aaPredicted RBP11.5□□□□□ -0.57
LDLR-214ENST00000560628 ANKRD1Q15327 319 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 CLUL1Q15846 466 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 XKR3Q5GH77 459 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 EARS2Q5JPH6 523 aaKnown RBP11.5□□□□□ -0.57
LDLR-214ENST00000560628 MOXD1Q6UVY6 613 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 PIK3AP1Q6ZUJ8 805 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 FAM178BQ8IXR5 827 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 FAM177A1Q8N128 213 aaPredicted RBP11.5□□□□□ -0.57
LDLR-214ENST00000560628 RNF169Q8NCN4 708 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 POF1BQ8WVV4 589 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 NLRP7Q8WX94 980 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 P2RX5Q93086 422 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 NIFKQ9BYG3 293 aaKnown RBP11.5□□□□□ -0.57
LDLR-214ENST00000560628 TYW1Q9NV66 732 aaKnown RBP11.5□□□□□ -0.57
LDLR-214ENST00000560628 PCDHGC5Q9Y5F6 944 aa11.5□□□□□ -0.57
LDLR-214ENST00000560628 COL4A6Q14031 1691 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms