RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 CDHR5Q9HBB8 845 aa20.32■□□□□ 0.84
TSPAN3-208ENST00000560514 SPG21Q9NZD8 308 aa20.32■□□□□ 0.84
TSPAN3-208ENST00000560514 HCFC2Q9Y5Z7 792 aa20.32■□□□□ 0.84
TSPAN3-208ENST00000560514 PLEKHA8P1O95397 391 aa20.31■□□□□ 0.84
TSPAN3-208ENST00000560514 CLCN5P51795 746 aa20.31■□□□□ 0.84
TSPAN3-208ENST00000560514 CRYBB1P53674 252 aaPredicted RBP20.31■□□□□ 0.84
TSPAN3-208ENST00000560514 KIAA0319LQ8IZA0 1049 aa20.31■□□□□ 0.84
TSPAN3-208ENST00000560514 ADSSL1Q8N142 457 aa20.31■□□□□ 0.84
TSPAN3-208ENST00000560514 PLCD3Q8N3E9 789 aa20.31■□□□□ 0.84
TSPAN3-208ENST00000560514 OSMRQ99650 979 aa20.31■□□□□ 0.84
TSPAN3-208ENST00000560514 DBR1Q9UK59 544 aaKnown RBP20.31■□□□□ 0.84
TSPAN3-208ENST00000560514 COL1A2P08123 1366 aa20.31■□□□□ 0.84
TSPAN3-208ENST00000560514 CCDC69A6NI79 296 aa20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 ASGR2P07307 311 aa20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 ZSCAN20P17040 1043 aaPredicted RBP20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 FAM189BP81408 668 aa20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 KIZQ2M2Z5 673 aa20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 ZNF484Q5JVG2 852 aa20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 HEATR3Q7Z4Q2 680 aa20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 SRBD1Q8N5C6 995 aaKnown RBP20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 FLCNQ8NFG4 579 aa20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 LIMD1Q9UGP4 676 aa20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 CDH22Q9UJ99 828 aa20.3■□□□□ 0.84
TSPAN3-208ENST00000560514 DDX39AO00148 427 aaKnown RBP20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 PBX3P40426 434 aa20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 ATAT1Q5SQI0 421 aa20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 PDXDC2PQ6P474 469 aa20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 FAM228AQ86W67 206 aa20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 CKAP2LQ8IYA6 745 aa20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 ZDHHC14Q8IZN3 488 aa20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 CMTR1Q8N1G2 835 aaKnown RBP20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 PIAS4Q8N2W9 510 aaPredicted RBP20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 TMTC2Q8N394 836 aa20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 MRPL43Q8N983 215 aaKnown RBP20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 CASD1Q96PB1 797 aa20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 SMOC2Q9H3U7 446 aa20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 LY9Q9HBG7 655 aa20.29■□□□□ 0.84
TSPAN3-208ENST00000560514 ATG7O95352 703 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 CALM1P0DP23 149 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 CALM2P0DP24 149 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 CALM3P0DP25 149 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 ARP10275 920 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 ZNF76P36508 570 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 ANTXR2P58335 489 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 PTH1RQ03431 593 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 RARS2Q5T160 578 aaKnown RBP20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 MB21D2Q8IYB1 491 aaPredicted RBP20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 CCDC82Q8N4S0 544 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 METTL13Q8N6R0 699 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 RNF169Q8NCN4 708 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 CYP2W1Q8TAV3 490 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 AGO4Q9HCK5 861 aaKnown RBP20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 ZNF302Q9NR11 478 aa20.28■□□□□ 0.84
TSPAN3-208ENST00000560514 MYH9P35579 1960 aaKnown RBP20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 hCG_1642624A0A1W2PR95 340 aa20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 C2orf71A6NGG8 1288 aa20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 CLASP2O75122 1294 aaKnown RBP20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 WEE2P0C1S8 567 aa20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 ITGB3BPQ13352 177 aaPredicted RBP20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 CEP55Q53EZ4 464 aa20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 MIS18BP1Q6P0N0 1132 aa20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 LRRC55Q6ZSA7 311 aa20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 DZANK1Q9NVP4 752 aa20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 USTQ9Y2C2 406 aa20.27■□□□□ 0.84
TSPAN3-208ENST00000560514 IGKV6D-21A0A0A0MT36 114 aa20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 SPDYE4A6NLX3 237 aa20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 CXCL14O95715 111 aa20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 FOSP01100 380 aaPredicted RBP20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 VTNP04004 478 aa20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 RXRAP19793 462 aa20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 ALDH7A1P49419 539 aaKnown RBP20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 KIAA1841Q6NSI8 718 aa20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 ACSF2Q96CM8 615 aaPredicted RBP20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 TMEM169Q96HH4 297 aa20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 MTA3Q9BTC8 594 aa20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 TAF6LQ9Y6J9 622 aa20.26■□□□□ 0.83
TSPAN3-208ENST00000560514 PRC1O43663 620 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 DSC3Q14574 896 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 SWSAP1Q6NVH7 229 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 ABHD15Q6UXT9 468 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 TRMT1LQ7Z2T5 733 aaKnown RBP20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 SLC39A11Q8N1S5 342 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 KCNG4Q8TDN1 519 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 MAP7D2Q96T17 732 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 CYP26B1Q9NR63 512 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 TCEAL9Q9UHQ7 104 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 FBXL21Q9UKT6 434 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 CEP131Q9UPN4 1083 aa20.25■□□□□ 0.83
TSPAN3-208ENST00000560514 VPS13AQ96RL7 3174 aa20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 GPR32O75388 356 aa20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 MCM5P33992 734 aa20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 METAP2P50579 478 aaKnown RBP eCLIP20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 ECHDC2Q86YB7 292 aa20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 CCDC60Q8IWA6 550 aaPredicted RBP20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 C12orf76Q8N812 135 aaPredicted RBP20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 BBXQ8WY36 941 aaPredicted RBP20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 PGBD1Q96JS3 809 aa20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 TMEM87BQ96K49 555 aa20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 MRPL9Q9BYD2 267 aaKnown RBP20.24■□□□□ 0.83
TSPAN3-208ENST00000560514 AKT3Q9Y243 479 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms