RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CALML4Q96GE6 196 aa24.28■■□□□ 1.48
SNX1-210ENST00000560260 NT5C3AQ9H0P0 336 aa24.28■■□□□ 1.48
SNX1-210ENST00000560260 PPME1Q9Y570 386 aa24.28■■□□□ 1.48
SNX1-210ENST00000560260 USO1O60763 962 aaKnown RBP24.27■■□□□ 1.48
SNX1-210ENST00000560260 CTSHP09668 335 aa24.27■■□□□ 1.48
SNX1-210ENST00000560260 THPOP40225 353 aa24.27■■□□□ 1.48
SNX1-210ENST00000560260 RFC5P40937 340 aa24.27■■□□□ 1.48
SNX1-210ENST00000560260 NAALADL2Q58DX5 795 aa24.27■■□□□ 1.48
SNX1-210ENST00000560260 ZNF618Q5T7W0 954 aa24.27■■□□□ 1.48
SNX1-210ENST00000560260 EFCAB12Q6NXP0 572 aa24.27■■□□□ 1.48
SNX1-210ENST00000560260 RPAINQ86UA6 219 aa24.27■■□□□ 1.48
SNX1-210ENST00000560260 DNM3Q9UQ16 869 aa24.27■■□□□ 1.48
SNX1-210ENST00000560260 SCN5AQ14524 2016 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 ARHGEF35A5YM69 484 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 PITPNM1O00562 1244 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 TIMP1P01033 207 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 POLGP54098 1239 aaPredicted RBP24.26■■□□□ 1.47
SNX1-210ENST00000560260 CCL23P55773 120 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 MGAT3Q09327 533 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 BFSP2Q13515 415 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 METTL13Q8N6R0 699 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 RASSF8Q8NHQ8 419 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 SCLYQ96I15 445 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 RUSC1Q9BVN2 902 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 OSBPL7Q9BZF2 842 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 SUGCTQ9HAC7 445 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 NR2E3Q9Y5X4 410 aa24.26■■□□□ 1.47
SNX1-210ENST00000560260 RAG1P15918 1043 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 TXLNAP40222 546 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 TMEM62Q0P6H9 643 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 MBTPS1Q14703 1052 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 ADALQ6DHV7 355 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 PADI6Q6TGC4 694 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 LRRC8DQ7L1W4 858 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 CCDC155Q8N6L0 562 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 SLC7A3Q8WY07 619 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 RAD54LQ92698 747 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 CCDC43Q96MW1 224 aaKnown RBP24.25■■□□□ 1.47
SNX1-210ENST00000560260 PANK2Q9BZ23 570 aa24.25■■□□□ 1.47
SNX1-210ENST00000560260 PDE4DIPQ5VU43 2346 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 H0YGN5 161 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 DGAT1O75907 488 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 VTNP04004 478 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 PLA2G4BP0C869 781 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 SELPP16109 830 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 SLC12A3P55017 1021 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 GPNMBQ14956 572 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 E2F4Q16254 413 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 PDILTQ8N807 584 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 RETREG2Q8NC44 543 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 BADQ92934 168 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 TMEM143Q96AN5 459 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 VWCEQ96DN2 955 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 PPP1R16BQ96T49 567 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 ATP6V0A4Q9HBG4 840 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 PRKAG2Q9UGJ0 569 aa24.24■■□□□ 1.47
SNX1-210ENST00000560260 CAND2O75155 1236 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 CHRNA1P02708 482 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 IQCF3P0C7M6 154 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 MRPS6P82932 125 aaKnown RBP24.23■■□□□ 1.47
SNX1-210ENST00000560260 MCM6Q14566 821 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 TPRNQ4KMQ1 711 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 FAM26DQ5JW98 314 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 RRAGBQ5VZM2 374 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 KCTD17Q8N5Z5 321 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 SYT2Q8N9I0 419 aaPredicted RBP24.23■■□□□ 1.47
SNX1-210ENST00000560260 MTRQ99707 1265 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 GOLPH3LQ9H4A5 285 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 GPRC5CQ9NQ84 441 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 CCDC39Q9UFE4 941 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 HPSEQ9Y251 543 aa24.23■■□□□ 1.47
SNX1-210ENST00000560260 PFKFB1P16118 471 aa24.22■■□□□ 1.47
SNX1-210ENST00000560260 CYP11B2P19099 503 aa24.22■■□□□ 1.47
SNX1-210ENST00000560260 CMA1P23946 247 aa24.22■■□□□ 1.47
SNX1-210ENST00000560260 MFSD5Q6N075 450 aa24.22■■□□□ 1.47
SNX1-210ENST00000560260 RINT1Q6NUQ1 792 aa24.22■■□□□ 1.47
SNX1-210ENST00000560260 MAEAQ7L5Y9 396 aa24.22■■□□□ 1.47
SNX1-210ENST00000560260 ZNF668Q96K58 619 aaPredicted RBP24.22■■□□□ 1.47
SNX1-210ENST00000560260 JPH2Q9BR39 696 aaPredicted RBP24.22■■□□□ 1.47
SNX1-210ENST00000560260 AKT3Q9Y243 479 aa24.22■■□□□ 1.47
SNX1-210ENST00000560260 CDY2AQ9Y6F7 541 aa24.22■■□□□ 1.47
SNX1-210ENST00000560260 FAM237AA0A1B0GTK4 181 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 A0A1B0GVL5 298 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 A0A1W2PQ27 194 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 A0A1W2PQ64 194 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 A0A1W2PQD8 194 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 SSBP05455 408 aaKnown RBP eCLIP24.21■■□□□ 1.47
SNX1-210ENST00000560260 CCDC73Q6ZRK6 1079 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 C1orf186Q6ZWK4 172 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 TMEM87AQ8NBN3 555 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 ASAP3Q8TDY4 903 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 LARP4BQ92615 738 aaKnown RBP24.21■■□□□ 1.47
SNX1-210ENST00000560260 MAP7D2Q96T17 732 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 CDHR5Q9HBB8 845 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 POLD4Q9HCU8 107 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 FAM13BQ9NYF5 915 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 SUCLA2Q9P2R7 463 aaPredicted RBP24.21■■□□□ 1.47
SNX1-210ENST00000560260 STK17AQ9UEE5 414 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 TRPV2Q9Y5S1 764 aa24.21■■□□□ 1.47
SNX1-210ENST00000560260 RSPH10B2B2RC85 870 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms