RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 GALCP54803 685 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 ANKRD20A8PQ5CZ79 823 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 DCAF12L1Q5VU92 463 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 EPS8L3Q8TE67 593 aaKnown RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 C18orf8Q96DM3 657 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 P2RX7Q99572 595 aaKnown RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 POP1Q99575 1024 aaKnown RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 LBHD1Q9BQE6 289 aaPredicted RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 REEP2Q9BRK0 252 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 TACO1Q9BSH4 297 aaKnown RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 RAB34Q9BZG1 259 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 AZI2Q9H6S1 392 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 LUC7LQ9NQ29 371 aaKnown RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 ODF2LQ9ULJ1 636 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 HOXD13P35453 343 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 TCP10Q12799 353 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 ZKSCAN8Q15776 578 aaPredicted RBP13.42□□□□□ -0.26
LDLR-205ENST00000557933 SWT1Q5T5J6 900 aaKnown RBP13.42□□□□□ -0.26
LDLR-205ENST00000557933 GALNT17Q6IS24 598 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 SEPT14Q6ZU15 432 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 LRRC57Q8N9N7 239 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 FBXO25Q8TCJ0 367 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 HVCN1Q96D96 273 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 BTBD6Q96KE9 485 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 FAM84AQ96KN4 292 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 CAMKK2Q96RR4 588 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.42□□□□□ -0.265e-8■□□□□ 11.1
LDLR-205ENST00000557933 BHMT2Q9H2M3 363 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 KCTD10Q9H3F6 313 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 YY1AP1Q9H869 796 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 PSTPIP2Q9H939 334 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 PLCB1Q9NQ66 1216 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 SNED1Q8TER0 1413 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 RBAK-RBAKDNI3L0D1 243 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 APBA3O96018 575 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 XRCC5P13010 732 aaKnown RBP13.42□□□□□ -0.26
LDLR-205ENST00000557933 TM4SF1P30408 202 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 NMT1P30419 496 aaKnown RBP13.42□□□□□ -0.26
LDLR-205ENST00000557933 FXR2P51116 673 aaKnown RBP eCLIP13.42□□□□□ -0.261e-6■□□□□ 10.3
LDLR-205ENST00000557933 CYP2J2P51589 502 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 IKQ13123 557 aaPredicted RBP13.42□□□□□ -0.26
LDLR-205ENST00000557933 TNIP1Q15025 636 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 PARP9Q8IXQ6 854 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 CCDC65Q8IXS2 484 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 PRMT1Q99873 361 aaKnown RBP13.42□□□□□ -0.26
LDLR-205ENST00000557933 RIC8AQ9NPQ8 531 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 TSKSQ9UJT2 592 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 SUFUQ9UMX1 484 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 PCDHAC2Q9Y5I4 1007 aa13.42□□□□□ -0.26
LDLR-205ENST00000557933 RASSF9O75901 435 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 CALCAP01258 141 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 CCDC172P0C7W6 258 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 PLCG2P16885 1265 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 TMEM119Q4V9L6 283 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 SCFD2Q8WU76 684 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 PRCCQ92733 491 aaPredicted RBP13.41□□□□□ -0.26
LDLR-205ENST00000557933 FAM118BQ9BPY3 351 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 SEMA4AQ9H3S1 761 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 TCRBV7S2A1N4TA0A589 114 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 A8MUI8 341 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 TISP43B9A030 160 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 F8VZ95 297 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 MMEP08473 750 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 H2AFZP0C0S5 128 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 GYS1P13807 737 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 TNFRSF8P28908 595 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 VPS41P49754 854 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 C6orf89Q6UWU4 347 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 H2AFVQ71UI9 128 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 CATSPER3Q86XQ3 398 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 NEDD1Q8NHV4 660 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 LNX1Q8TBB1 728 aaPredicted RBP13.41□□□□□ -0.26
LDLR-205ENST00000557933 SLC35G2Q8TBE7 412 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 ALG3Q92685 438 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 KRT35Q92764 455 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 FMO2Q99518 471 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 DDX4Q9NQI0 724 aaKnown RBP13.41□□□□□ -0.26
LDLR-205ENST00000557933 PKD2L1Q9P0L9 805 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 ANKRD31Q8N7Z5 1873 aa13.41□□□□□ -0.26
LDLR-205ENST00000557933 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.4□□□□□ -0.26
LDLR-205ENST00000557933 EVI5O60447 810 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 MYBL1P10243 752 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 NF2P35240 595 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 SLC29A2Q14542 456 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 TRIP13Q15645 432 aaPredicted RBP13.4□□□□□ -0.26
LDLR-205ENST00000557933 SNCBQ16143 134 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 GKAP1Q5VSY0 366 aaPredicted RBP13.4□□□□□ -0.26
LDLR-205ENST00000557933 LRRC34Q8IZ02 419 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 PWWP2AQ96N64 755 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 RUSC1Q9BVN2 902 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 THAP2Q9H0W7 228 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 TMEM59LQ9UK28 342 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 TRIM33Q9UPN9 1127 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 PCDHA2Q9Y5H9 948 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 C6orf229H3BNL8 230 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 CHUKO15111 745 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 AFPP02771 609 aaKnown RBP13.4□□□□□ -0.26
LDLR-205ENST00000557933 PAX7P23759 505 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 GTF2IP78347 998 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 CTTNQ14247 550 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms