RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 M0QZ92 97 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 BAIAP3O94812 1187 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 BMP15O95972 392 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 VTNP04004 478 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 GHRP10912 638 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 XRCC6P12956 609 aaKnown RBP eCLIP15.88■□□□□ 0.13
SHMT2-217ENST00000555116 PDIA4P13667 645 aaKnown RBP15.88■□□□□ 0.13
SHMT2-217ENST00000555116 DRP2Q13474 957 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 XKR9Q5GH70 373 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 RAB34Q9BZG1 259 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 DHX33Q9H6R0 707 aaKnown RBP15.88■□□□□ 0.13
SHMT2-217ENST00000555116 CHMP5Q9NZZ3 219 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 CLIC4Q9Y696 253 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 SQORQ9Y6N5 450 aa15.88■□□□□ 0.13
SHMT2-217ENST00000555116 GPR32O75388 356 aa15.87■□□□□ 0.13
SHMT2-217ENST00000555116 TMOD1P28289 359 aa15.87■□□□□ 0.13
SHMT2-217ENST00000555116 CCT6AP40227 531 aaKnown RBP15.87■□□□□ 0.13
SHMT2-217ENST00000555116 PTPAQ15257 358 aa15.87■□□□□ 0.13
SHMT2-217ENST00000555116 ECM1Q16610 540 aa15.87■□□□□ 0.13
SHMT2-217ENST00000555116 FAM109BQ6ICB4 259 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-217ENST00000555116 PIGOQ8TEQ8 1089 aa15.87■□□□□ 0.13
SHMT2-217ENST00000555116 SEPT8Q92599 483 aa15.87■□□□□ 0.13
SHMT2-217ENST00000555116 LRCH3Q96II8 777 aa15.87■□□□□ 0.13
SHMT2-217ENST00000555116 MAP7D2Q96T17 732 aa15.87■□□□□ 0.13
SHMT2-217ENST00000555116 AGO3Q9H9G7 860 aaKnown RBP15.87■□□□□ 0.13
SHMT2-217ENST00000555116 LAMA3Q16787 3333 aa15.87■□□□□ 0.13
SHMT2-217ENST00000555116 ABHD14A-ACY1A0A1B0GW23 586 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 ZBBXA8MT70 800 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 ZSCAN22P10073 491 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-217ENST00000555116 MUTP22033 750 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 DDIT3P35638 169 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 RFC5P40937 340 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 PKP1Q13835 747 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 HAUS3Q68CZ6 603 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 POTEGQ6S5H5 508 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 TSHZ1Q6ZSZ6 1077 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 PPP1R16BQ96T49 567 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 JPH2Q9BR39 696 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-217ENST00000555116 MMTAG2Q9BU76 263 aaKnown RBP15.86■□□□□ 0.13
SHMT2-217ENST00000555116 ADAMTS10Q9H324 1103 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 AKT3Q9Y243 479 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 STK24Q9Y6E0 443 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 SLC4A7Q9Y6M7 1214 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 TTC3P53804 2025 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-217ENST00000555116 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-217ENST00000555116 VWA3AA6NCI4 1184 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 GRXCR1A8MXD5 290 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 CDC25AP30304 524 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 RARRES1P49788 294 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 CRYBB1P53674 252 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-217ENST00000555116 WDR5P61964 334 aaKnown RBP15.86■□□□□ 0.13
SHMT2-217ENST00000555116 SMAD3P84022 425 aaKnown RBP15.86■□□□□ 0.13
SHMT2-217ENST00000555116 IKBKEQ14164 716 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 KIZQ2M2Z5 673 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 USP38Q8NB14 1042 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 SNX29Q8TEQ0 813 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 TMEM40Q8WWA1 233 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 NACC1Q96RE7 527 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 USP28Q96RU2 1077 aa15.86■□□□□ 0.13
SHMT2-217ENST00000555116 IFIH1Q9BYX4 1025 aaKnown RBP15.86■□□□□ 0.13
SHMT2-217ENST00000555116 DBR1Q9UK59 544 aaKnown RBP15.86■□□□□ 0.13
SHMT2-217ENST00000555116 GPC3P51654 580 aa15.85■□□□□ 0.13
SHMT2-217ENST00000555116 POLGP54098 1239 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-217ENST00000555116 NLRP11P59045 1033 aaKnown RBP15.85■□□□□ 0.13
SHMT2-217ENST00000555116 EMC2Q15006 297 aa15.85■□□□□ 0.13
SHMT2-217ENST00000555116 FOXD4L5Q5VV16 416 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-217ENST00000555116 EXOC8Q8IYI6 725 aa15.85■□□□□ 0.13
SHMT2-217ENST00000555116 ZNF710Q8N1W2 664 aa15.85■□□□□ 0.13
SHMT2-217ENST00000555116 FOXD4L4Q8WXT5 416 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-217ENST00000555116 SLC7A3Q8WY07 619 aa15.85■□□□□ 0.13
SHMT2-217ENST00000555116 APBB2Q92870 758 aa15.85■□□□□ 0.13
SHMT2-217ENST00000555116 XPNPEP1Q9NQW7 623 aa15.85■□□□□ 0.13
SHMT2-217ENST00000555116 SUCLA2Q9P2R7 463 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-217ENST00000555116 GINS2Q9Y248 185 aa15.85■□□□□ 0.13
SHMT2-217ENST00000555116 MYO9BQ13459 2157 aa15.85■□□□□ 0.13
SHMT2-217ENST00000555116 EFCAB14O75071 495 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 F13A1P00488 732 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 CD52P31358 61 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 DEKP35659 375 aaKnown RBP15.84■□□□□ 0.13
SHMT2-217ENST00000555116 DNM2P50570 870 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 GRIN1Q05586 938 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 KRT79Q5XKE5 535 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 OSMRQ99650 979 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 BMP2KQ9NSY1 1161 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-217ENST00000555116 NOC2LQ9Y3T9 749 aaKnown RBP15.84■□□□□ 0.13
SHMT2-217ENST00000555116 TCHHQ07283 1943 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 DEFB103AP81534 67 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.84■□□□□ 0.134e-7■□□□□ 9.3
SHMT2-217ENST00000555116 PHOSPHO2Q8TCD6 241 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 TMEM143Q96AN5 459 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 ZNF668Q96K58 619 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-217ENST00000555116 SLC9A7Q96T83 725 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 ERVK-5Q9HDB9 667 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 PADI3Q9ULW8 664 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 KIAA1024Q9UPX6 916 aa15.84■□□□□ 0.13
SHMT2-217ENST00000555116 MORC2Q9Y6X9 1032 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-217ENST00000555116 GAS2O43903 313 aaKnown RBP15.83■□□□□ 0.12
SHMT2-217ENST00000555116 DGAT1O75907 488 aa15.83■□□□□ 0.12
SHMT2-217ENST00000555116 ATP2A2P16615 1042 aaKnown RBP15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms