RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 DRP2Q13474 957 aa25.49■■□□□ 1.67
TDP1-206ENST00000553569 KIZQ2M2Z5 673 aa25.49■■□□□ 1.67
TDP1-206ENST00000553569 POTEGQ6S5H5 508 aa25.49■■□□□ 1.67
TDP1-206ENST00000553569 IGSF22Q8N9C0 903 aa25.49■■□□□ 1.67
TDP1-206ENST00000553569 SNX29Q8TEQ0 813 aa25.49■■□□□ 1.67
TDP1-206ENST00000553569 PIGOQ8TEQ8 1089 aa25.49■■□□□ 1.67
TDP1-206ENST00000553569 IFIH1Q9BYX4 1025 aaKnown RBP25.49■■□□□ 1.67
TDP1-206ENST00000553569 ZSCAN16Q9H4T2 348 aaPredicted RBP25.49■■□□□ 1.67
TDP1-206ENST00000553569 MICAL3Q7RTP6 2002 aa25.49■■□□□ 1.67
TDP1-206ENST00000553569 MAFO75444 373 aaPredicted RBP25.48■■□□□ 1.67
TDP1-206ENST00000553569 BMP15O95972 392 aa25.48■■□□□ 1.67
TDP1-206ENST00000553569 RPA1P27694 616 aa25.48■■□□□ 1.67
TDP1-206ENST00000553569 BECN1Q14457 450 aa25.48■■□□□ 1.67
TDP1-206ENST00000553569 PDIA5Q14554 519 aa25.48■■□□□ 1.67
TDP1-206ENST00000553569 TSHZ1Q6ZSZ6 1077 aa25.48■■□□□ 1.67
TDP1-206ENST00000553569 SLC7A3Q8WY07 619 aa25.48■■□□□ 1.67
TDP1-206ENST00000553569 ZNF668Q96K58 619 aaPredicted RBP25.48■■□□□ 1.67
TDP1-206ENST00000553569 CLIC4Q9Y696 253 aa25.48■■□□□ 1.67
TDP1-206ENST00000553569 KDM3AQ9Y4C1 1321 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 IGKV6-21A0A0C4DH24 114 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 GRXCR1A8MXD5 290 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 KCNJ6P48051 423 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 WDR5P61964 334 aaKnown RBP25.47■■□□□ 1.67
TDP1-206ENST00000553569 MKRN4PQ13434 485 aaPredicted RBP25.47■■□□□ 1.67
TDP1-206ENST00000553569 IKBKEQ14164 716 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 SCLT1Q96NL6 688 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 OSMRQ99650 979 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 JPH2Q9BR39 696 aaPredicted RBP25.47■■□□□ 1.67
TDP1-206ENST00000553569 CDHR5Q9HBB8 845 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 ANKEF1Q9NU02 776 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 PPME1Q9Y570 386 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 PTPRSQ13332 1948 aa25.47■■□□□ 1.67
TDP1-206ENST00000553569 HSFX4A0A1B0GTS1 333 aaPredicted RBP25.46■■□□□ 1.67
TDP1-206ENST00000553569 ABHD14A-ACY1A0A1B0GW23 586 aa25.46■■□□□ 1.67
TDP1-206ENST00000553569 HSFX3A0A1B0GWH4 333 aaPredicted RBP25.46■■□□□ 1.67
TDP1-206ENST00000553569 CDC25AP30304 524 aa25.46■■□□□ 1.67
TDP1-206ENST00000553569 CD52P31358 61 aa25.46■■□□□ 1.67
TDP1-206ENST00000553569 RFC5P40937 340 aa25.46■■□□□ 1.67
TDP1-206ENST00000553569 DNM2P50570 870 aa25.46■■□□□ 1.67
TDP1-206ENST00000553569 NLRP11P59045 1033 aaKnown RBP25.46■■□□□ 1.67
TDP1-206ENST00000553569 CEBPZQ03701 1054 aaKnown RBP25.46■■□□□ 1.67
TDP1-206ENST00000553569 EMC2Q15006 297 aa25.46■■□□□ 1.67
TDP1-206ENST00000553569 ARL6IP4Q66PJ3 421 aaKnown RBP25.46■■□□□ 1.67
TDP1-206ENST00000553569 DHX33Q9H6R0 707 aaKnown RBP25.46■■□□□ 1.67
TDP1-206ENST00000553569 AGO3Q9H9G7 860 aaKnown RBP25.46■■□□□ 1.67
TDP1-206ENST00000553569 GBF1Q92538 1859 aa25.46■■□□□ 1.67
TDP1-206ENST00000553569 GPR32O75388 356 aa25.45■■□□□ 1.66
TDP1-206ENST00000553569 ATP2A2P16615 1042 aaKnown RBP25.45■■□□□ 1.66
TDP1-206ENST00000553569 RARRES1P49788 294 aa25.45■■□□□ 1.66
TDP1-206ENST00000553569 DEFB103AP81534 67 aa25.45■■□□□ 1.66
TDP1-206ENST00000553569 SMAD3P84022 425 aaKnown RBP25.45■■□□□ 1.66
TDP1-206ENST00000553569 PKP1Q13835 747 aa25.45■■□□□ 1.66
TDP1-206ENST00000553569 ECM1Q16610 540 aa25.45■■□□□ 1.66
TDP1-206ENST00000553569 KRT79Q5XKE5 535 aa25.45■■□□□ 1.66
TDP1-206ENST00000553569 TMEM40Q8WWA1 233 aa25.45■■□□□ 1.66
TDP1-206ENST00000553569 APBB2Q92870 758 aa25.45■■□□□ 1.66
TDP1-206ENST00000553569 SUCLA2Q9P2R7 463 aaPredicted RBP25.45■■□□□ 1.66
TDP1-206ENST00000553569 STK24Q9Y6E0 443 aa25.45■■□□□ 1.66
TDP1-206ENST00000553569 EFCAB14O75071 495 aa25.44■■□□□ 1.66
TDP1-206ENST00000553569 ZSCAN22P10073 491 aaPredicted RBP25.44■■□□□ 1.66
TDP1-206ENST00000553569 GPC3P51654 580 aa25.44■■□□□ 1.66
TDP1-206ENST00000553569 CRYBB1P53674 252 aaPredicted RBP25.44■■□□□ 1.66
TDP1-206ENST00000553569 PAK2Q13177 524 aa25.44■■□□□ 1.66
TDP1-206ENST00000553569 ZRSR1Q15695 479 aaKnown RBP25.44■■□□□ 1.66
TDP1-206ENST00000553569 EXOC8Q8IYI6 725 aa25.44■■□□□ 1.66
TDP1-206ENST00000553569 TMEM143Q96AN5 459 aa25.44■■□□□ 1.66
TDP1-206ENST00000553569 NACC1Q96RE7 527 aa25.44■■□□□ 1.66
TDP1-206ENST00000553569 SLC9A7Q96T83 725 aa25.44■■□□□ 1.66
TDP1-206ENST00000553569 MTRQ99707 1265 aa25.44■■□□□ 1.66
TDP1-206ENST00000553569 SQORQ9Y6N5 450 aa25.44■■□□□ 1.66
TDP1-206ENST00000553569 LAMA3Q16787 3333 aa25.43■■□□□ 1.66
TDP1-206ENST00000553569 USO1O60763 962 aaKnown RBP25.43■■□□□ 1.66
TDP1-206ENST00000553569 PDIA4P13667 645 aaKnown RBP25.43■■□□□ 1.66
TDP1-206ENST00000553569 RHPN2Q8IUC4 686 aa25.43■■□□□ 1.66
TDP1-206ENST00000553569 USP38Q8NB14 1042 aa25.43■■□□□ 1.66
TDP1-206ENST00000553569 NLRP7Q8WX94 980 aa25.43■■□□□ 1.66
TDP1-206ENST00000553569 USP28Q96RU2 1077 aa25.43■■□□□ 1.66
TDP1-206ENST00000553569 ADAMTS10Q9H324 1103 aa25.43■■□□□ 1.66
TDP1-206ENST00000553569 ATP6V0A4Q9HBG4 840 aa25.43■■□□□ 1.66
TDP1-206ENST00000553569 DDX19AQ9NUU7 478 aaKnown RBP25.43■■□□□ 1.66
TDP1-206ENST00000553569 PADI3Q9ULW8 664 aa25.43■■□□□ 1.66
TDP1-206ENST00000553569 KIAA1024Q9UPX6 916 aa25.43■■□□□ 1.66
TDP1-206ENST00000553569 NOC2LQ9Y3T9 749 aaKnown RBP25.43■■□□□ 1.66
TDP1-206ENST00000553569 RPS6KA5O75582 802 aa25.42■■□□□ 1.66
TDP1-206ENST00000553569 F13A1P00488 732 aa25.42■■□□□ 1.66
TDP1-206ENST00000553569 MUTP22033 750 aa25.42■■□□□ 1.66
TDP1-206ENST00000553569 PBX2P40425 430 aa25.42■■□□□ 1.66
TDP1-206ENST00000553569 RABGGTBP53611 331 aa25.42■■□□□ 1.66
TDP1-206ENST00000553569 NFX1Q12986 1120 aaKnown RBP25.42■■□□□ 1.66
TDP1-206ENST00000553569 PTPAQ15257 358 aa25.42■■□□□ 1.66
TDP1-206ENST00000553569 FOXD4L6Q3SYB3 417 aaPredicted RBP25.42■■□□□ 1.66
TDP1-206ENST00000553569 FOXD4L3Q6VB84 417 aaPredicted RBP25.42■■□□□ 1.66
TDP1-206ENST00000553569 LIN28BQ6ZN17 250 aaKnown RBP eCLIP25.42■■□□□ 1.66
TDP1-206ENST00000553569 TMCO2Q7Z6W1 182 aaPredicted RBP25.42■■□□□ 1.66
TDP1-206ENST00000553569 NLRP4Q96MN2 994 aa25.42■■□□□ 1.66
TDP1-206ENST00000553569 MMTAG2Q9BU76 263 aaKnown RBP25.42■■□□□ 1.66
TDP1-206ENST00000553569 XPNPEP1Q9NQW7 623 aa25.42■■□□□ 1.66
TDP1-206ENST00000553569 DBR1Q9UK59 544 aaKnown RBP25.42■■□□□ 1.66
TDP1-206ENST00000553569 ARHGEF35A5YM69 484 aa25.41■■□□□ 1.66
TDP1-206ENST00000553569 GAS2O43903 313 aaKnown RBP25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms