RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 LRRC71Q8N4P6 559 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 METTL13Q8N6R0 699 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 IL27Q8NEV9 243 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 ARNTL2Q8WYA1 636 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 MTMR9Q96QG7 549 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 ADAMTS10Q9H324 1103 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 UPF2Q9HAU5 1272 aaKnown RBP11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 ERVK-5Q9HDB9 667 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 NOC2LQ9Y3T9 749 aaKnown RBP11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 DDX11L8A8MPP1 907 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 ST18O60284 1047 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 UPP2O95045 317 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 P4HBP07237 508 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 QARSP47897 775 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 PAK2Q13177 524 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 DRP2Q13474 957 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 SAFBQ15424 915 aaKnown RBP eCLIP11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 CALCRLQ16602 461 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 KIZQ2M2Z5 673 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 MTERF2Q49AM1 385 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 SLFN12Q8IYM2 578 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 TMX3Q96JJ7 454 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 TGS1Q96RS0 853 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 PPP1R16BQ96T49 567 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 OSMRQ99650 979 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 SH2D3AQ9BRG2 576 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 FTHL17Q9BXU8 183 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 TSPYL2Q9H2G4 693 aaPredicted RBP11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 TMEM60Q9H2L4 133 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 FOXP1Q9H334 677 aaPredicted RBP11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 RC3H2Q9HBD1 1191 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 RGL1Q9NZL6 768 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 SEPT9Q9UHD8 586 aaPredicted RBP11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 GINS2Q9Y248 185 aa11.54□□□□□ -0.56
CCDC88C-206ENST00000553437 MARCH6O60337 910 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 MGEA5O60502 916 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 MAFO75444 373 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 RPS6KA5O75582 802 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 BAG4O95429 457 aaKnown RBP11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 LINC00271P0C7V0 271 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 IGFBP4P22692 258 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 TMOD1P28289 359 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 NLRP11P59045 1033 aaKnown RBP11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 TBC1D8BQ0IIM8 1120 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 GRB10Q13322 594 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 PLA2G4FQ68DD2 849 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 NCAPH2Q6IBW4 605 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 FAM43BQ6ZT52 329 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 FAM228AQ86W67 206 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 C4orf19Q8IY42 314 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 ZNF579Q8NAF0 562 aaKnown RBP11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 FAM184AQ8NB25 1140 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 ZNF689Q96CS4 500 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 DYDC2Q96IM9 177 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 MAP7D2Q96T17 732 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 YME1L1Q96TA2 773 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 HSD17B14Q9BPX1 270 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 C17orf80Q9BSJ5 609 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 SUGCTQ9HAC7 445 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 PCDHA12Q9UN75 941 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 ST3GAL5Q9UNP4 418 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 AKT3Q9Y243 479 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 MTCH2Q9Y6C9 303 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 REV3LO60673 3130 aa11.53□□□□□ -0.56
CCDC88C-206ENST00000553437 ZBTB39O15060 712 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 GPR182O15218 404 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 NEMFO60524 1076 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 DKC1O60832 514 aaKnown RBP eCLIP11.52□□□□□ -0.575e-9■■■■■ 40.8
CCDC88C-206ENST00000553437 DGKIO75912 1065 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 SLITRK3O94933 977 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 ATP2B1P20020 1258 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 EIF4BP23588 611 aaKnown RBP11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 U2AF2P26368 475 aaKnown RBP eCLIP11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 TXKP42681 527 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 GPC3P51654 580 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 NPEPPSP55786 919 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 NFX1Q12986 1120 aaKnown RBP11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 CTTNQ14247 550 aaKnown RBP11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 DSC3Q14574 896 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 NOSTRINQ8IVI9 506 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 ZNF710Q8N1W2 664 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 ZNF668Q96K58 619 aaPredicted RBP11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 LXNQ9BS40 222 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 BACH2Q9BYV9 841 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 TTC12Q9H892 705 aaPredicted RBP11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 CYP26B1Q9NR63 512 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 MTUS1Q9ULD2 1270 aa11.52□□□□□ -0.57
CCDC88C-206ENST00000553437 PTPRSQ13332 1948 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 LYPLA2O95372 231 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 DARSP14868 501 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 YWHABP31946 246 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 MCM7P33993 719 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 MCM2P49736 904 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 FAM189BP81408 668 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 CYP4A11Q02928 519 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 ZNF174Q15697 407 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 CCDC85BQ15834 202 aaPredicted RBP11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 NPAS4Q8IUM7 802 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 C4orf32Q8N8J7 132 aa11.51□□□□□ -0.57
CCDC88C-206ENST00000553437 PPM1EQ8WY54 764 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms