RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ANKRD39Q53RE8 183 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 SOGA3Q5TF21 947 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 NPM2Q86SE8 214 aaKnown RBP4.78□□□□□ -1.64
LIMA1-206ENST00000550611 MORC1Q86VD1 984 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 IL17REQ8NFR9 667 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 DDX11Q96FC9 970 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 MASTLQ96GX5 879 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 ZNF496Q96IT1 587 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-206ENST00000550611 GORASP1Q9BQQ3 440 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 C11orf84Q9BUA3 381 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-206ENST00000550611 TEX13AQ9BXU3 409 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-206ENST00000550611 PPP4R1LQ9P1A2 415 aa4.78□□□□□ -1.64
LIMA1-206ENST00000550611 AFDNP55196 1824 aaKnown RBP4.78□□□□□ -1.64
LIMA1-206ENST00000550611 KIF20BQ96Q89 1820 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 SHTN1A0MZ66 631 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 A1BGP04217 495 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 PURAQ00577 322 aaKnown RBP4.77□□□□□ -1.65
LIMA1-206ENST00000550611 CCDC93Q567U6 631 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 RGMBQ6NW40 437 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 FBXL19Q6PCT2 694 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 ZNF790Q6PG37 636 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 CLEC4GQ6UXB4 293 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 Q7L0L9 218 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 PLEKHH3Q7Z736 793 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 GPC2Q8N158 579 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 LZTR1Q8N653 840 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 KYQ8NBH2 561 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 LCORQ96JN0 433 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-206ENST00000550611 FCRL3Q96P31 734 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-206ENST00000550611 RXFP1Q9HBX9 757 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 SAGE1Q9NXZ1 904 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 SUPT16HQ9Y5B9 1047 aaKnown RBP4.77□□□□□ -1.65
LIMA1-206ENST00000550611 FHOD1Q9Y613 1164 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 HS3ST3A1Q9Y663 406 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 PRUNE2Q8WUY3 3088 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 TRPM7Q96QT4 1865 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 HEG1Q9ULI3 1381 aa4.77□□□□□ -1.65
LIMA1-206ENST00000550611 C9orf118A6NHY6 69 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 KCNQ3O43525 872 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 C8BP07358 591 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 HMOX1P09601 288 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 NPR1P16066 1061 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 ZNF445P59923 1031 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 RBM10P98175 930 aaKnown RBP4.76□□□□□ -1.65
LIMA1-206ENST00000550611 PKN2Q16513 984 aaKnown RBP4.76□□□□□ -1.65
LIMA1-206ENST00000550611 FBXO46Q6PJ61 603 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-206ENST00000550611 USP50Q70EL3 339 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-206ENST00000550611 RTKN2Q8IZC4 609 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 CNBD1Q8NA66 436 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 TXNDC5Q8NBS9 432 aaKnown RBP4.76□□□□□ -1.65
LIMA1-206ENST00000550611 SNED1Q8TER0 1413 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 SLC9A7Q96T83 725 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 SEMA4AQ9H3S1 761 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 ING1Q9UK53 422 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-206ENST00000550611 USP16Q9Y5T5 823 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 KIAA0100Q14667 2235 aaKnown RBP4.76□□□□□ -1.65
LIMA1-206ENST00000550611 SCN11AQ9UI33 1791 aa4.76□□□□□ -1.65
LIMA1-206ENST00000550611 MUC3AQ02505 3323 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 C9IYK1 514 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 B4GALT3O60512 393 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 ACRP10323 421 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 HSPA5P11021 654 aaKnown RBP4.75□□□□□ -1.65
LIMA1-206ENST00000550611 IARSP41252 1262 aaKnown RBP4.75□□□□□ -1.65
LIMA1-206ENST00000550611 ST5P78524 1137 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 CRY2Q49AN0 593 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 PRR31Q5SQ13 230 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 NOL9Q5SY16 702 aaKnown RBP4.75□□□□□ -1.65
LIMA1-206ENST00000550611 INTS3Q68E01 1043 aaKnown RBP4.75□□□□□ -1.65
LIMA1-206ENST00000550611 MCTP2Q6DN12 878 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 RCSD1Q6JBY9 416 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 ERMP1Q7Z2K6 904 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 CCDC144CPQ8IYA2 1237 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 TTC5Q8N0Z6 440 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 PSMD1Q99460 953 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 KBTBD4Q9NVX7 518 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 FBLN5Q9UBX5 448 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 PGAP2Q9UHJ9 254 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 SF3B6Q9Y3B4 125 aaKnown RBP4.75□□□□□ -1.65
LIMA1-206ENST00000550611 TESMINQ9Y4I5 508 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 DLEC1Q9Y238 1755 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 CEMIPQ8WUJ3 1361 aa4.75□□□□□ -1.65
LIMA1-206ENST00000550611 COL4A5P29400 1685 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 PRAMEF22A3QJZ6 481 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 NPEPPSL1A6NEC2 478 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 GPR42O15529 346 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 DIAPH1O60610 1272 aaKnown RBP4.74□□□□□ -1.65
LIMA1-206ENST00000550611 IFNGR1P15260 489 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 TGM1P22735 817 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 ALDH1B1P30837 517 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 EIF4A3P38919 411 aaKnown RBP4.74□□□□□ -1.65
LIMA1-206ENST00000550611 CRKP46108 304 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 SELENOPP49908 381 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 PMS1P54277 932 aaKnown RBP4.74□□□□□ -1.65
LIMA1-206ENST00000550611 EIF6P56537 245 aaKnown RBP4.74□□□□□ -1.65
LIMA1-206ENST00000550611 POU4F1Q01851 419 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 CLCQ05315 142 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 SMN1Q16637 294 aaKnown RBP4.74□□□□□ -1.65
LIMA1-206ENST00000550611 EEF1DP3Q658K8 133 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 CIR1Q86X95 450 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-206ENST00000550611 NBPF5PQ86XG9 351 aaPredicted RBP4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms