RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 MBLAC1A4D2B0 266 aaPredicted RBP12.08□□□□□ -0.48
VPS29-208ENST00000550267 HOXA2O43364 376 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 CYTH3O43739 400 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 PDGFBP01127 241 aaPredicted RBP12.08□□□□□ -0.48
VPS29-208ENST00000550267 IBSPP21815 317 aaPredicted RBP12.08□□□□□ -0.48
VPS29-208ENST00000550267 IGBP1P78318 339 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 GRM4Q14833 912 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 PTPN21Q16825 1174 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 VN1R2Q8NFZ6 395 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 MICAL1Q8TDZ2 1067 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 PIBF1Q8WXW3 757 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 SUSD6Q92537 303 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 SENP7Q9BQF6 1050 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 FAM49AQ9H0Q0 323 aaPredicted RBP12.08□□□□□ -0.48
VPS29-208ENST00000550267 IRF2BPLQ9H1B7 796 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 CNNM2Q9H8M5 875 aa12.08□□□□□ -0.48
VPS29-208ENST00000550267 PNMA6FA0A0J9YX94 578 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 GSTTP1A0A1W2PQM5 241 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 ATP9AO75110 1047 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 TRIOO75962 3097 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 STAG3L1P0CL83 205 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 SCG2P13521 617 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 ATF7P17544 494 aaPredicted RBP12.07□□□□□ -0.48
VPS29-208ENST00000550267 SKOR1P84550 965 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 TMEM62Q0P6H9 643 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 PCNX4Q63HM2 1172 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 ASCL5Q7RTU5 278 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 NLRX1Q86UT6 975 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 ATP8B4Q8TF62 1192 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 HPS1Q92902 700 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 DSCC1Q9BVC3 393 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 FTHL17Q9BXU8 183 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 LNPKQ9C0E8 428 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 ERAP1Q9NZ08 941 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 PADI3Q9ULW8 664 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 TRPV2Q9Y5S1 764 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 MYO7AQ13402 2215 aa12.07□□□□□ -0.48
VPS29-208ENST00000550267 SNRPBP14678 240 aaKnown RBP12.06□□□□□ -0.48
VPS29-208ENST00000550267 KCNA2P16389 499 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 SP100P23497 879 aaPredicted RBP12.06□□□□□ -0.48
VPS29-208ENST00000550267 ERVFC1P60507 584 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 PAK2Q13177 524 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 DUSP6Q16828 381 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 SPOUT1Q5T280 376 aaKnown RBP12.06□□□□□ -0.48
VPS29-208ENST00000550267 USP17L6PQ6QN14 398 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 ZBTB33Q86T24 672 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 GIMAP8Q8ND71 665 aaPredicted RBP12.06□□□□□ -0.48
VPS29-208ENST00000550267 SMARCC2Q8TAQ2 1214 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 SEPT1Q8WYJ6 367 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 GLG1Q92896 1179 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 RIPOR3Q96MK2 946 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 NEK1Q96PY6 1258 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 APOL5Q9BWW9 433 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 DIAPH3Q9NSV4 1193 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 LRFN2Q9ULH4 789 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 PLXNA3P51805 1871 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 PLXNA4Q9HCM2 1894 aa12.06□□□□□ -0.48
VPS29-208ENST00000550267 TTC3P53804 2025 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 PROB1E7EW31 1015 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 INSRRP14616 1297 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 FOXK2Q01167 660 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 UBE3AQ05086 875 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 IER5Q5VY09 327 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 XRRA1Q6P2D8 792 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 S1PR5Q9H228 398 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 TMX1Q9H3N1 280 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 SMARCAD1Q9H4L7 1026 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 PCDHB12Q9Y5F1 795 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 SQORQ9Y6N5 450 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 IGSF9BQ9UPX0 1349 aa12.05□□□□□ -0.48
VPS29-208ENST00000550267 PRR23AA6NEV1 266 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 RRN3P2A6NIE6 340 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 M0QZ92 97 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 MEIS2O14770 477 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 FGF18O76093 207 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 ITGB5P18084 799 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 TECP42680 631 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 APOBRQ0VD83 1088 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 TMEM266Q2M3C6 531 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 DIEXFQ68CQ4 756 aaKnown RBP12.04□□□□□ -0.48
VPS29-208ENST00000550267 ANKRD54Q6NXT1 300 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 SYCE2Q6PIF2 218 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 KREMEN2Q8NCW0 462 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 TRAPPC12Q8WVT3 735 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 CUL5Q93034 780 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 GPRASP2Q96D09 838 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 PCYT2Q99447 389 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 CDCA3Q99618 268 aaPredicted RBP12.04□□□□□ -0.48
VPS29-208ENST00000550267 CELF4Q9BZC1 486 aaKnown RBP12.04□□□□□ -0.48
VPS29-208ENST00000550267 STK17AQ9UEE5 414 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 CDH22Q9UJ99 828 aa12.04□□□□□ -0.48
VPS29-208ENST00000550267 TBKBP1A7MCY6 615 aa12.03□□□□□ -0.48
VPS29-208ENST00000550267 TULP1O00294 542 aaPredicted RBP12.03□□□□□ -0.48
VPS29-208ENST00000550267 TERTO14746 1132 aaKnown RBP12.03□□□□□ -0.48
VPS29-208ENST00000550267 IFIT3O14879 490 aaKnown RBP12.03□□□□□ -0.48
VPS29-208ENST00000550267 FSCN2O14926 492 aa12.03□□□□□ -0.48
VPS29-208ENST00000550267 MGEA5O60502 916 aa12.03□□□□□ -0.48
VPS29-208ENST00000550267 RPLP2P05387 115 aaKnown RBP12.03□□□□□ -0.48
VPS29-208ENST00000550267 JUNDP17535 347 aa12.03□□□□□ -0.48
VPS29-208ENST00000550267 SARSP49591 514 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms