RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 CD207Q9UJ71 328 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 SYNPO2Q9UMS6 1093 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 SCN5AQ14524 2016 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 ZFHX4Q86UP3 3567 aa8.05□□□□□ -1.12
DEPDC4-208ENST00000549341 MCM3APO60318 1980 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 FAM186AA6NE01 2351 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 MYH8P13535 1937 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 A6NJR5 290 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 H3BM21 787 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 H3BNC9 293 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 LINC01565O15544 149 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 NMT2O60551 498 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 KPNA6O60684 536 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 LGR5O75473 907 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 ARIH2O95376 493 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 YEATS4O95619 227 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 BMP15O95972 392 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 MMP1P03956 469 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 MMP3P08254 477 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 ZNF286BP0CG31 522 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 FDX1P10109 184 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 TXNP10599 105 aaKnown RBP8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 SCG2P13521 617 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 GTF2F1P35269 517 aaKnown RBP eCLIP8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 KRT2P35908 639 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 LTBRP36941 435 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 NOVP48745 357 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 NLRP5P59047 1200 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 ZXDAP98168 799 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 HYAL1Q12794 435 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 MBTPS1Q14703 1052 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 COL19A1Q14993 1142 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 STK38Q15208 465 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 PKN1Q16512 942 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 RILPL1Q5EBL4 403 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 ZNF618Q5T7W0 954 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 RCSD1Q6JBY9 416 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 ASCL5Q7RTU5 278 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 TMEM192Q8IY95 271 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 CCDC82Q8N4S0 544 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 BICD2Q8TD16 824 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 MORC4Q8TE76 937 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 SCFD2Q8WU76 684 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 CHURC1Q8WUH1 139 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 WNT8BQ93098 351 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 RRP36Q96EU6 259 aaKnown RBP8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 SAMD11Q96NU1 681 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 SPZ1Q9BXG8 430 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 IFIH1Q9BYX4 1025 aaKnown RBP8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 PRR12Q9ULL5 1215 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 DCHS1Q96JQ0 3298 aa8.04□□□□□ -1.12
DEPDC4-208ENST00000549341 CHD8Q9HCK8 2581 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 TPRP12270 2363 aaKnown RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 PALM3A6NDB9 673 aaPredicted RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 KLRF2D3W0D1 207 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 NKRFO15226 690 aaKnown RBP eCLIP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 PLEKHA8P1O95397 391 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 PARNO95453 639 aaKnown RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 ICAM1P05362 532 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 CTSHP09668 335 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 GNA11P29992 359 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 THPOP40225 353 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 ID4P47928 161 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 HTRA4P83105 476 aaPredicted RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 PFKFB3Q16875 520 aaPredicted RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 MYSM1Q5VVJ2 828 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 SMYD5Q6GMV2 418 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 CAVIN1Q6NZI2 390 aaKnown RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 ERMP1Q7Z2K6 904 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 BMP8AQ7Z5Y6 402 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 ZBTB33Q86T24 672 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 DHX37Q8IY37 1157 aaKnown RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 DIS3L2Q8IYB7 885 aaKnown RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 SRBD1Q8N5C6 995 aaKnown RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 DCAF4Q8WV16 495 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 LEO1Q8WVC0 666 aaPredicted RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 GMCL1Q96IK5 515 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 MPHOSPH6Q99547 160 aaKnown RBP8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 GLT8D2Q9H1C3 349 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 RTEL1Q9NZ71 1219 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 HDAC6Q9UBN7 1215 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 GTF2IRD1Q9UHL9 959 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 RCOR1Q9UKL0 485 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 CNTNAP5Q8WYK1 1306 aa8.03□□□□□ -1.12
DEPDC4-208ENST00000549341 ACACBO00763 2458 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 ZNFX1Q9P2E3 1918 aaKnown RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 RBM47A0AV96 593 aaKnown RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 PRR23AA6NEV1 266 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 GOLGA6L3A6NEY3 463 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 GRM6O15303 877 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 CAPN5O15484 640 aaPredicted RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 NCK2O43639 380 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 SORBS3O60504 671 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 PPFIA3O75145 1194 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 SP100P23497 879 aaPredicted RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 U2AF2P26368 475 aaKnown RBP eCLIP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 SLC16A2P36021 539 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 ME1P48163 572 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 TRAPPC10P48553 1259 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 ZNF200P98182 395 aaPredicted RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms