RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 JDP2Q8WYK2 163 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 MTMR8Q96EF0 704 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 CCDC8Q9H0W5 538 aaPredicted RBP5.63□□□□□ -1.51
VPS29-205ENST00000548539 MEGF9Q9H1U4 602 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 EPB41L1Q9H4G0 881 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 WDR26Q9H7D7 661 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 METTL14Q9HCE5 456 aaKnown RBP5.63□□□□□ -1.51
VPS29-205ENST00000548539 SMURF1Q9HCE7 757 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 SPTLC3Q9NUV7 552 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 CROTQ9UKG9 612 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 X6R8D5 127 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 TCRBV5S4A2TA0A5A2 114 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 ZNF561-AS1K7EIQ3 104 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 DGKIO75912 1065 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 KPNA1P52294 538 aaPredicted RBP5.62□□□□□ -1.51
VPS29-205ENST00000548539 DPTQ07507 201 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 ITKQ08881 620 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 SPIRE1Q08AE8 756 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 NFATC3Q12968 1075 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 MTMR1Q13613 665 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 GPR19Q15760 415 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 RNF207Q6ZRF8 634 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 OTOP3Q7RTS5 596 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 RBM12BQ8IXT5 1001 aaKnown RBP5.62□□□□□ -1.51
VPS29-205ENST00000548539 Q8N1Y9 231 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 ZNF503Q96F45 646 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 TRIM8Q9BZR9 551 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 CD244Q9BZW8 370 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 CSRNP2Q9H175 543 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 IKZF4Q9H2S9 585 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 APOBEC2Q9Y235 224 aaKnown RBP5.62□□□□□ -1.51
VPS29-205ENST00000548539 PHLDB1Q86UU1 1377 aa5.62□□□□□ -1.51
VPS29-205ENST00000548539 SLC12A8A0AV02 714 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 SCDO00767 359 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 ZEB2O60315 1214 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 MCM7P33993 719 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 LACTBP83111 547 aaPredicted RBP5.61□□□□□ -1.51
VPS29-205ENST00000548539 ATP13A4Q4VNC1 1196 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 MROH9Q5TGP6 573 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 CREB3L3Q68CJ9 461 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 IQSEC1Q6DN90 963 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 HDGFL2Q7Z4V5 671 aaPredicted RBP5.61□□□□□ -1.51
VPS29-205ENST00000548539 RAVER1Q8IY67 606 aaKnown RBP5.61□□□□□ -1.51
VPS29-205ENST00000548539 SH3RF2Q8TEC5 729 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.61□□□□□ -1.51
VPS29-205ENST00000548539 TOE1Q96GM8 510 aaKnown RBP5.61□□□□□ -1.51
VPS29-205ENST00000548539 WRNIP1Q96S55 665 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 EMC7Q9NPA0 242 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 OXSMQ9NWU1 459 aa5.61□□□□□ -1.51
VPS29-205ENST00000548539 MAN2B1O00754 1011 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 SLC27A2O14975 620 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 PRKD3O94806 890 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 PARNO95453 639 aaKnown RBP5.6□□□□□ -1.51
VPS29-205ENST00000548539 LTFP02788 710 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 LSSP48449 732 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 IRF9Q00978 393 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 HABP4Q5JVS0 413 aaKnown RBP5.6□□□□□ -1.51
VPS29-205ENST00000548539 STEAP3Q658P3 488 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 TRMT10BQ6PF06 316 aaKnown RBP5.6□□□□□ -1.51
VPS29-205ENST00000548539 EP400NLQ6ZTU2 488 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 NECAB2Q7Z6G3 386 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 C11orf74Q86VG3 221 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 CNTD1Q8N815 330 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 ZCCHC14Q8WYQ9 949 aaKnown RBP5.6□□□□□ -1.51
VPS29-205ENST00000548539 ADOQ96SZ5 270 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 BOCQ9BWV1 1114 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 ASPSCR1Q9BZE9 553 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 DSEQ9UL01 958 aa5.6□□□□□ -1.51
VPS29-205ENST00000548539 THRAP3Q9Y2W1 955 aaKnown RBP5.6□□□□□ -1.51
VPS29-205ENST00000548539 H7C1D1 291 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 KRIT1O00522 736 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 ALDH1L1O75891 902 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 ZBTB48P10074 688 aaPredicted RBP5.59□□□□□ -1.51
VPS29-205ENST00000548539 SLC9A1P19634 815 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 NANOS3P60323 173 aaKnown RBP5.59□□□□□ -1.51
VPS29-205ENST00000548539 ARHGAP44Q17R89 818 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 USP39Q53GS9 565 aaKnown RBP5.59□□□□□ -1.51
VPS29-205ENST00000548539 IGFL4Q6B9Z1 124 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 OTOP1Q7RTM1 612 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 RIOX2Q8IUF8 465 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 AMER2Q8N7J2 671 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 KIAA1958Q8N8K9 716 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 GNRHR2Q96P88 292 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 TMEM209Q96SK2 561 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 SEC61A2Q9H9S3 476 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 VTA1Q9NP79 307 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 SLC6A20Q9NP91 592 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 ADAM29Q9UKF5 820 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 TRHDEQ9UKU6 1024 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 SRPK3Q9UPE1 567 aa5.59□□□□□ -1.51
VPS29-205ENST00000548539 DVL2O14641 736 aa5.58□□□□□ -1.52
VPS29-205ENST00000548539 FOXS1O43638 330 aa5.58□□□□□ -1.52
VPS29-205ENST00000548539 NARSO43776 548 aaKnown RBP5.58□□□□□ -1.52
VPS29-205ENST00000548539 HIP1RO75146 1068 aa5.58□□□□□ -1.52
VPS29-205ENST00000548539 KIF11P52732 1056 aa5.58□□□□□ -1.52
VPS29-205ENST00000548539 OCRLQ01968 901 aa5.58□□□□□ -1.52
VPS29-205ENST00000548539 TTF1Q15361 905 aaPredicted RBP5.58□□□□□ -1.52
VPS29-205ENST00000548539 ZNF174Q15697 407 aa5.58□□□□□ -1.52
VPS29-205ENST00000548539 TCTN3Q6NUS6 607 aa5.58□□□□□ -1.52
VPS29-205ENST00000548539 NOSTRINQ8IVI9 506 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms