RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 SERPINB6P35237 376 aa13.45□□□□□ -0.26
COL4A6-209ENST00000545689 PEX3P56589 373 aa13.45□□□□□ -0.26
COL4A6-209ENST00000545689 EAPPQ56P03 285 aaPredicted RBP13.45□□□□□ -0.26
COL4A6-209ENST00000545689 TTC39CQ8N584 583 aa13.45□□□□□ -0.26
COL4A6-209ENST00000545689 PDS5AQ29RF7 1337 aaKnown RBP13.44□□□□□ -0.26
COL4A6-209ENST00000545689 LMNAP02545 664 aaKnown RBP13.44□□□□□ -0.26
COL4A6-209ENST00000545689 TRIM72Q6ZMU5 477 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 METTL16Q86W50 562 aaKnown RBP13.44□□□□□ -0.26
COL4A6-209ENST00000545689 WNT8AQ9H1J5 351 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 NUB1Q9Y5A7 615 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 P4HBP07237 508 aaKnown RBP13.44□□□□□ -0.26
COL4A6-209ENST00000545689 PLS3P13797 630 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 ARL4CP56559 192 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 RAPH1Q70E73 1250 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 TMEM35BQ8NCS4 154 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 PYROXD1Q8WU10 500 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 ANGPTL2Q9UKU9 493 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 CNOT8Q9UFF9 292 aaKnown RBP13.44□□□□□ -0.26
COL4A6-209ENST00000545689 NRXN1Q9ULB1 1477 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 DIP2CQ9Y2E4 1556 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 AP3M2P53677 418 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 TFDP2Q14188 446 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 INTS2Q9H0H0 1204 aaKnown RBP13.44□□□□□ -0.26
COL4A6-209ENST00000545689 TUBE1Q9UJT0 475 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 TLK1Q9UKI8 766 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 ADAM21Q9UKJ8 722 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 TTC26A0AVF1 554 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 E9PMD0 336 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 GFPT1Q06210 699 aaPredicted RBP13.44□□□□□ -0.26
COL4A6-209ENST00000545689 SPARCL1Q14515 664 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 MAP3K14Q99558 947 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 CALN1Q9BXU9 219 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 TUFT1Q9NNX1 390 aa13.44□□□□□ -0.26
COL4A6-209ENST00000545689 EIF2AK2P19525 551 aaKnown RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 IREB2P48200 963 aaKnown RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 IQCB1Q15051 598 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 KLHL38Q2WGJ6 581 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 KCTD17Q8N5Z5 321 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 CLTCQ00610 1675 aaKnown RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 NBPF26B4DH59 902 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 ZBED1O96006 694 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 ZKSCAN8Q15776 578 aaPredicted RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 NBPF10Q6P3W6 841 aaKnown RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 NBPF15Q8N660 670 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 ZNF341Q9BYN7 854 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 KLC2Q9H0B6 622 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 CSF1RP07333 972 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 PSMA2P25787 234 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 DHX34Q14147 1143 aaKnown RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 ARL13BQ3SXY8 428 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 C12orf60Q5U649 245 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 LRRC4Q9HBW1 653 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 ADAM22Q9P0K1 906 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 USP17L10C9JJH3 530 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 PDXKO00764 312 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 KRT37O76014 449 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 MAGEA9P43362 315 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 ZNF667Q5HYK9 610 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 SLC27A3Q5K4L6 730 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 ZBTB33Q86T24 672 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 SIX6OS1Q8N1H7 587 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 RNF169Q8NCN4 708 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 FAM149B1Q96BN6 582 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 HDAC11Q96DB2 347 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 FAM84BQ96KN1 310 aaPredicted RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 EFHD1Q9BUP0 239 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 NXF1Q9UBU9 619 aaKnown RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 KIAA0391O15091 583 aaKnown RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 GCKP35557 465 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 VAMP7P51809 220 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 ADGRF4Q8IZF3 695 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 TAB3Q8N5C8 712 aaPredicted RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 CELF1Q92879 486 aaKnown RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 HEXIM2Q96MH2 286 aaKnown RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 C7orf25Q9BPX7 421 aa13.43□□□□□ -0.26
COL4A6-209ENST00000545689 TAF1DQ9H5J8 278 aaPredicted RBP13.43□□□□□ -0.26
COL4A6-209ENST00000545689 SPOUT1Q5T280 376 aaKnown RBP13.42□□□□□ -0.26
COL4A6-209ENST00000545689 JADE1Q6IE81 842 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 SCYL3Q8IZE3 742 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 DEPDC1BQ8WUY9 529 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 DYDC2Q96IM9 177 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 VIPAS39Q9H9C1 493 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 ASNSD1Q9NWL6 643 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 ANAPC7Q9UJX3 599 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 NMT2O60551 498 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 DPYDQ12882 1025 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 THOC5Q13769 683 aaKnown RBP13.42□□□□□ -0.26
COL4A6-209ENST00000545689 NBPF9Q3BBW0 867 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 IGDCC4Q8TDY8 1250 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 C2orf40Q9H1Z8 148 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 PPP1R9AQ9ULJ8 1098 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 GOLGA8IPA6NC78 632 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 GOLGA8JA6NMD2 632 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 SLCO1A2P46721 670 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 DYNLT1P63172 113 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 RBBP5Q15291 538 aaKnown RBP13.42□□□□□ -0.26
COL4A6-209ENST00000545689 STXBP2Q15833 593 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 ARHGAP27Q6ZUM4 889 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 TTLL6Q8N841 843 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 CCNYQ8ND76 341 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms