RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 ODR4Q5SWX8 454 aa14.64□□□□□ -0.07
USP28-212ENST00000544750 UBALD2Q8IYN6 164 aa14.64□□□□□ -0.07
USP28-212ENST00000544750 TCF25Q9BQ70 676 aa14.64□□□□□ -0.07
USP28-212ENST00000544750 SDF4Q9BRK5 362 aa14.64□□□□□ -0.07
USP28-212ENST00000544750 TMEM117Q9H0C3 514 aa14.64□□□□□ -0.07
USP28-212ENST00000544750 POMKQ9H5K3 350 aa14.64□□□□□ -0.07
USP28-212ENST00000544750 ATP6V0A4Q9HBG4 840 aa14.64□□□□□ -0.07
USP28-212ENST00000544750 GINS2Q9Y248 185 aa14.64□□□□□ -0.07
USP28-212ENST00000544750 NR2E1Q9Y466 385 aa14.64□□□□□ -0.07
USP28-212ENST00000544750 C2CD4DB7Z1M9 353 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 MEIS1O00470 390 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 GPR32O75388 356 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 RXRAP19793 462 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 CRYBB1P53674 252 aaPredicted RBP14.63□□□□□ -0.07
USP28-212ENST00000544750 MTMR3Q13615 1198 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 TYW1BQ6NUM6 668 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 LLGL2Q6P1M3 1020 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 KCNT2Q6UVM3 1135 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 CCDC60Q8IWA6 550 aaPredicted RBP14.63□□□□□ -0.07
USP28-212ENST00000544750 RUFY2Q8WXA3 655 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 ADAM7Q9H2U9 754 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 ENTPD7Q9NQZ7 604 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 HCFC2Q9Y5Z7 792 aa14.63□□□□□ -0.07
USP28-212ENST00000544750 CACNA1AO00555 2505 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 ZNF292O60281 2723 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 DHX15O43143 795 aaKnown RBP14.62□□□□□ -0.07
USP28-212ENST00000544750 PRC1O43663 620 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 C22orf31O95567 290 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 LIFRP42702 1097 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 ITIH3Q06033 890 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 KIZQ2M2Z5 673 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 ZNF484Q5JVG2 852 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 TMTC3Q6ZXV5 915 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 ZBTB33Q86T24 672 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 TEX2Q8IWB9 1127 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 TMTC2Q8N394 836 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 CASP10Q92851 521 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 PGBD1Q96JS3 809 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 NECTIN4Q96NY8 510 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 OSMRQ99650 979 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 SMOC2Q9H3U7 446 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 PUF60Q9UHX1 559 aaKnown RBP14.62□□□□□ -0.07
USP28-212ENST00000544750 WDR87Q6ZQQ6 2873 aa14.62□□□□□ -0.07
USP28-212ENST00000544750 C2orf71A6NGG8 1288 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 CALM1P0DP23 149 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 CALM2P0DP24 149 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 CALM3P0DP25 149 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 PBX3P40426 434 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 WWC2Q6AWC2 1192 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 CASC1Q6TDU7 716 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 CCDC82Q8N4S0 544 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 MRPL43Q8N983 215 aaKnown RBP14.61□□□□□ -0.07
USP28-212ENST00000544750 TMEM87BQ96K49 555 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 ANO3Q9BYT9 981 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 RIC8AQ9NPQ8 531 aa14.61□□□□□ -0.07
USP28-212ENST00000544750 RBM8AQ9Y5S9 174 aaKnown RBP14.61□□□□□ -0.07
USP28-212ENST00000544750 FANCMQ8IYD8 2048 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 CCDC69A6NI79 296 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 HOXA2O43364 376 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 CLASP2O75122 1294 aaKnown RBP14.6□□□□□ -0.07
USP28-212ENST00000544750 FOSP01100 380 aaPredicted RBP14.6□□□□□ -0.07
USP28-212ENST00000544750 PPM1AP35813 382 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 SREBF1P36956 1147 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 CLK2P49760 499 aaKnown RBP14.6□□□□□ -0.07
USP28-212ENST00000544750 TPRNQ4KMQ1 711 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 FAM160B1Q5W0V3 765 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 ASTLQ6HA08 431 aaPredicted RBP14.6□□□□□ -0.07
USP28-212ENST00000544750 NIPA1Q7RTP0 329 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 TMC7Q7Z402 723 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 HEATR3Q7Z4Q2 680 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 RAB11FIP4Q86YS3 637 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 ZDHHC14Q8IZN3 488 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 SLC39A11Q8N1S5 342 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 LRRC43Q8N309 656 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 LINC01465Q8N7H1 131 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 FANCBQ8NB91 859 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 CRYGNQ8WXF5 182 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 ZNF558Q96NG5 402 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 PPP1R16BQ96T49 567 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 ZNF302Q9NR11 478 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 SPG21Q9NZD8 308 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 CNTNAP5Q8WYK1 1306 aa14.6□□□□□ -0.07
USP28-212ENST00000544750 BACH1O14867 736 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 VTNP04004 478 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 ASGR2P07307 311 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 MCM5P33992 734 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 MTHFRP42898 656 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 KRT17Q04695 432 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 FUT2Q10981 343 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 SMC1AQ14683 1233 aaKnown RBP14.59□□□□□ -0.07
USP28-212ENST00000544750 CLLU1OSQ5K130 101 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 CES5AQ6NT32 575 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 PDXDC2PQ6P474 469 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 NFXL1Q6ZNB6 911 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 ZNF598Q86UK7 904 aaKnown RBP14.59□□□□□ -0.07
USP28-212ENST00000544750 SGMS1Q86VZ5 419 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 ECHDC2Q86YB7 292 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 BBXQ8WY36 941 aaPredicted RBP14.59□□□□□ -0.07
USP28-212ENST00000544750 ADAMTS10Q9H324 1103 aa14.59□□□□□ -0.07
USP28-212ENST00000544750 TSHZ2Q9NRE2 1034 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms